Detailed information on CNT30553906


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697378Oryza glaberrimaOryza sativa9.0243.2482.68179reverse complement
CNT30596279Oryza glaberrimaOryza meridionalis28.2370.1892.32560forward
CNT30106983Oryza glaberrimaOryza longistaminata56.575.2989.651121forward
CNT30116684Oryza glaberrimaOryza nivara41.78103.2489.75829forward

Expression of CNT30553906

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MDLMEKSRRANFLFDDDGDEDQNDKQNKREANKDKGSTTVNRAGEKTNTEEFKSRGLPNGTSKDRSSGLLACLLCCCAPRRN*

>peptide 2 (31 aa)
MANTILVAMANTKKQLVCEERDKKESGGEEK*

>peptide 3 (30 aa)
MPWPGFLLFNGLFGKSIGSLMSKLMFGHET*

>peptide 4 (50 aa)
MGQEAHTWPMYDPQHCLDQSPSLVEKPSLVGPPKSTIVSVPLKIGTKKHF*

>peptide 5 (46 aa)
MRLDRELQFTPILTSGLKRSLHTFSKAKHPISSARNGPRSPYMAHV*

>peptide 6 (65 aa)
MRIKTTNKIRERLIRTRDQLLLIELGRKLTQRSSKVVDYQTALVRIAPPGCWHACCVAVHRGEIN*

>peptide 7 (52 aa)
SLYICVCACIYHAAYETSHESDALVQVRKLKPTTHHTHIYIHSHPSFFHFSF*

>peptide 8 (40 aa)
MQEYCTIAIYIIVSTCLIYLTYITCTIYKFLSQIVLLNRD*

>peptide 9 (38 aa)
MKLQLFLSQKLDIDSHRALFAKIWLTRFWLRWLTRRSN*

Sequence

>CNT30553906
CTTCACTATATATATGTGTGTGCGCGTGCATATACCATGCGGCCTACGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGCGCAAACTGAAGCCAAC
CACACACCACACACACATATATATACATTCACATCCAAGTTTCTTCCATTTTTCCTTTTAAAGCTGCAGGGTGCTCTTCTTCTCTAGATTGATCATATAT
CATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTTATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACGACGGAGATGAGGATCAAAA
CGACAAACAAAATAAGAGAGAGGCTAATAAGGACAAGGGATCAACTACTGTTAATCGAGCTGGGGAGAAAACTAACACAGAGGAGTTCAAAAGTCGTGGA
CTACCAAACGGCACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCATGCTTGCTGTGTTGCTGTGCACCGCGGCGAAATTAACTAAGTTCTAGTACAAAAT
AAGACACATCATAATTCTACGAATCGGAATTTGAGGTATGCTTAGATTTGCAGTACTAGAATATACTATAATATATACAAGTTGTTATGTTTTGGGACGG
AGGGGTATATAACAATGATGTTGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCGCACCGCCGGTTACCGGTGATTACCAATTACTCT
CATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTAAAAGAAATTAGATAGTACTACATGTGATTGT
TTGTATGTGTGTTTAGATATTAATGTTATGCAAGAATATTGTACTATCGCCATATATATAATCGTGTCAACTTGTTTGATATATTTGACATATATAACTT
GTACAATTTACAAATTTCTTTCTCAAATTGTGTTACTTAATCGTGACTGAGAAGTGGAAGAGGCTTGCTCCACGAAGATACATACGTACAACCACAGCGA
TAACAAAGGAGGATTGAAACGATCAACGACAATACATCCACAGAAAAGATCGTTACGATCCATATGAGAAATCTATTACCAAACCGGATAAATTACAAGT
ATATATAAGAGAATTAGAGGCATAGACTACGAAGAAGCAATTTTTTTTCGGGGAAAAGGGAATATATTACTCCTCACAAACAAGGTGAGAGATGAAATTA
CAACTGTTTTTAAGCCAGAAATTAGACATAGACTCACATCGTGCCTTATTTGCTAAGATATGGCTAACACGATTTTGGTTGCGATGGCTAACACGAAGAA
GCAATTAGTATGTGAAGAAAGGGATAAGAAAGAATCAGGTGGAGAGGAAAAGTAGTGTGCACTGTGCAGAAGAAAGGAAGCCGATGCCTTGGCCTGGCTT
CTTGCTTTTTAACGGCTTGTTTGGCAAGAGTATCGGGAGTTTGATGAGTAAATTGATGTTTGGGCATGAGACTTGACAGGGAGCTCCAATTCACCCCAAT
TTTGACATCTGGATTAAAGAGGAGTCTTCATACTTTTTCCAAAGCCAAGCATCCCATCTCGAGTGCAAGGAATGGGCCAAGAAGCCCATACATGGCCCAT
GTATGATCCGCAACATTGCTTGGACCAGAGCCCATCACTGGTGGAGAAACCATCTTTGGTCGGTCCACCCAAATCTACAATAGTCTCGGTTCCATTAAAA
ATCGGGACTAAAAAACATTTTTAGTCCTGGTTTATAACTGTAAGAGGACTATATCATCTTTAATCCCGGTTCGTGTTATCAACCGAGACTAAAAATCATC
TTTAGTCCCCGTTCATGTCGTGTCAGAGGCTGCTAATCCCTAGAGATCTTTAGTCTCGGTTGATGGTACCAACCAGGACTAAAATCCTAACTTTAGTCCC
GGTTGTTGTTCCCAACCAGGACTAAAAATCAAATATACCGTATATAATCCCTTGCTGCTATCCTCAAAAATTTCTATCTCCTAT