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Detailed information on CNT30106983


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553906Oryza longistaminataOryza glaberrima75.4256.689.671123forward
CNT30596279Oryza longistaminataOryza meridionalis31.1658.1594.83464forward
CNT30370123Oryza longistaminataOryza glumipatula61.6536.7691.39918forward
CNT30101645Oryza longistaminataOryza rufipogon32.5154.5795.04484forward
CNT30576500Oryza longistaminataOryza barthii75.4239.8889.761123forward
CNT30116684Oryza longistaminataOryza nivara30.9657.4194.58461forward

Expression of CNT30106983

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLRFTVVEYTILYTKLLCFRMSDFEPAVI*

>peptide 2 (79 aa)
MDLMEKSRRANFLFDDNDGDEDQNDKQNKGEANKDKKGSTPINKEKFTRRGLPNGTSKDRSSGLLASLLCCCGPRRNKS*

>peptide 3 (63 aa)
MRIKTTNKIRERLIRTRRDQLQLTKRSSHVVDYQTALVRIAPPGCWQACCVVVDRGEISPSTK*

>peptide 4 (62 aa)
AAYETSHESDALVQVCKLKPTHTPHTHIYTDSHPSSFHFSFESCRVLFFFSRLILYHLRAPN*

>peptide 5 (40 aa)
MQEYCTIAIYIIVSTCLIYLTYITCTIYKFLSQIVLLNRD*

Sequence

>CNT30106983
TGCGGCCTACGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGATTCACAT
CCAAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGC
CATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAATAAGGGAGAGGCTAAT
AAGGACAAGAAGGGATCAACTCCAATTAACAAAGAGAAGTTCACACGTCGTGGACTACCAAACGGCACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAA
GCTTGCTGTGTTGTTGTGGACCGCGGCGAAATAAGTCCTAGTACAAAATGAGACACACATCCTAATTCTACGATTCGGGGTCTGAGGTATGCTCAGATTT
ACAGTAGTAGAATATACTATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACC
GCCGGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTAAA
AGAAATTAGATAGTACTACATGTGATTGTGTGTATGTGTGTTTAGATATTAATGTTATGCAAGAATATTGTACTATCGCCATATATATAATCGTGTCAAC
TTGTTTGATATATTTGACATATATAACTTGTACAATTTACAAATTTCTTTCTCAAATTGTGTTACTTAATCGTGACTGAGAAGTGGAAGAGGCTTGCTCC
ACGAAGATACATACGTACAACCACAGCGATATAACAAAGGAGGATTGAAACGATCAACGACAATACATCCACAGAAAAGATCGTTACGATCCATCTGAGA
AATCTATTACCAAACCGAATAAATTGCAAGTATATATAAGAGAATTAGAGGCATAGACTAACGAAGAAGCAATTAGTATGTGAAGAAAGGGATAAGAAAG
AATCAGGTGGAGAGGAAAAGTAGTGTGCACGGTGCAGAAGAAAGGAAGCCGATGCCTTGGCCTGGCTTCTTGCTTTTTAACGGCTTGTTTGGCAAGAGTA
TCGAGAGTTTGGATGAGTAAACTGATGGTAAGATTAATAAATGAATTTGATTTTTAATCCTAGTTTTTTGTTTGGTAGAGGTGGTGAAATTAAAATTGGC
AAGAATTAATATAGACTAGATTTTTAATGAAAATAGATGGCTGAATTTTTTTTAGAATTACACAGTACAACACAGACATTCACGACGCACGCGGACTCAC
CCCTATGAACGCACGCACGCAACCCTACCCCTATGAGCATCTTCGAAGACTGGGCCGGCAAATCCTTGAGATTGATGAAGTCACTGCAT