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Detailed information on CNT3059207


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554259Amborella trichopodaOryza glaberrima49.8356.4279.91448forward
CNT30574573Amborella trichopodaVitis vinifera37.938.4985.92341forward
CNT30104690Amborella trichopodaOryza rufipogon49.8336.0780.8448forward

Expression of CNT3059207

Peptides detected in this lncRNA

>peptide 1 (74 aa)
SLVRPDRKTPVGSKALQTKGGTVSRPALPTSVKLEPKKTWFHTHTRHAEGMGRHDQFTTESEFDPIPIVVFFVR*

>peptide 2 (34 aa)
MPAGPTPKTLLSLFFSRSLQQFEGEALKTCSDVS*

Sequence

>CNT3059207
TTCTTTAGTTAGGCCCGACCGTAAGACCCCGGTGGGATCGAAGGCCCTACAGACAAAAGGGGGGACCGTTTCTCGACCAGCCCTACCTACTTCAGTGAAG
CTGGAACCGAAAAAGACCTGGTTCCACACACACACGAGACACGCAGAAGGTATGGGACGACACGACCAGTTCACCACGGAAAGCGAATTCGATCCTATTC
CTATAGTCGTCTTCTTTGTTCGATAAGTGCGCAGTTGAAAGGGATGCTAGTCGGCTCGGCAAAGTTGTAGGCCCCAATAGATCAAGAGTGATTCCTCACC
CCCAGTCGAACGCTCGAGTATAGATTCCCTATGCTCATTTGAACGGCCGGGGCCGGCCCGTAGATCTAAACCATCCATAGGCCTGACCGGAAATCGTTTG
TCCACGAACAAACAGTAGTAGTAGTTCATTCAACCTCGAATTCCCACGTTCCAGCGTGCATTATGCCAGCGGGTCCCACCCCCAAAACCCTTCTTTCTCT
TTTTTTTTCAAGATCGCTGCAGCAGTTTGAAGGCGAGGCGCTCAAGACCTGTTCGGACGTGAGCTGAGCTTCCAACAAGAAGATCCTACTACTGCTCATT
CCAGCGGACGGACCGCTCCCCGCTCGCTTTTGAGAATCGCGTACTTCTTTTTCTCACCAGAATGTATGTGAAAATGAACTTACCGGCCGGTGGGTGATTC
TGGTTCTATCTCCGCTTGGTCCAAGTTTTCATTCCCCCTTTTTTATTCAGGAGGTGAGGTTCGGGGGTCGGAGGGACCTTTAGACTCGTTACGCTTAACG
ACTGAACTCGTTGGCGGAGCGCTCCGTTGTTCACCGCTAGTTTATAGTACAAGTCTATCAGAAGTGGTTTCGGTTTTGTTTTAGTATGGTCCAGATCGT