Detailed information on CNT30104690


BLAST search results

BLAST vs Swiss-Prot:
sp|P04373|COX2_ORYSJ, E-value = 9e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618782Oryza rufipogonSesamum indicum21.514.9592.51267forward
CNT30193656Oryza rufipogonSecale cereale66.8384.0198.92830forward
CNT30290429Oryza rufipogonTriticum aestivum9.1852.0599.12114reverse complement
CNT30592667Oryza rufipogonMusa acuminata38.0844.7189.43473forward
CNT30554259Oryza rufipogonOryza glaberrima37.1258.0699.13461forward
CNT30438126Oryza rufipogonAegilops tauschii44.28100.5596.55550forward
CNT30228106Oryza rufipogonAnanas comosus23.8368.3684.12296reverse complement
CNT30596067Oryza rufipogonOryza meridionalis728.4310087reverse complement
CNT30358835Oryza rufipogonLactuca sativa29.9517.5592.47372forward
CNT30574573Oryza rufipogonVitis vinifera39.7712.393.93494forward
CNT3059207Oryza rufipogonAmborella trichopoda36.0749.8380.13448forward

Expression of CNT30104690

Peptides detected in this lncRNA

>peptide 1 (39 aa)
ASKMMKRSFVDKARSVLDLRARVVRPRPTSIRASYALHP*

>peptide 2 (30 aa)
MFVHEKKSFMRPRIPTFQPALCQQVPPPIS*

>peptide 3 (50 aa)
MRQNEGMGRPVHHGKRIRSFSSLLCSKNAQWKGMLVGFGEVVGPNRSDQE*

>peptide 4 (44 aa)
MHSTRKRALELFERASEAFLELPPSLTRELHFRFSFPGLVGLED*

>peptide 5 (31 aa)
MKVWDGQFTTESEFDPLVVFFVRKMRSGKGC*

Sequence

>CNT30104690
AAGCAAGCAAGATGATGAAGCGAAGCTTCGTAGACAAGGCTCGTTCCGTGCTTGACTTACGAGCTCGTGTAGTAAGGCCTCGCCCTACTTCAATAAGGGC
TTCTTATGCACTCCACCCGTAAACGAGCGTTAGAGCTTTTTGAGCGAGCGAGCGAAGCCTTCCTGGAGCTTCCCCCTTCCCTCACCCGAGAATTGCATTT
CCGCTTCAGCTTCCCCGGTTTAGTTGGTTTGGAGGATTAATTGATTGGATACCCAATCCGCATAATCTTTCAAAGTCACCGCTTCTACGACGATAGGCGT
AAAGGCATGATTAGTTCCACAAATCTCACTGCACTGACCATAGTAAACTCCTTCTCGTTGTACCGAGATGGAGGTAAGATTTGAACGACCAGGTACAGCA
TCACATTTGACACCTGAGGAAGGTACAGCCCAACTATGAGGTACATCAGCGGGTGTTACAATCATACGTAGATGAGTTTTGGCTGGTACAACCACTCTAT
TGTCAACTTCTAATAAACGTGATTGACCCAATTCTGGATCATCTTCTGGAATCGTATAACTGTCAAAAGTGAGTGACTGTTCATCGGAACTGTTATAGTC
CGAATACTCATAAGGTTGGGTCGACGCCCGCCTCCCCCCAAACTTTACTTGCAAGTTTCCCCGCAAAAAGCTCTCCACGCCTACTCTTATTTATAAAGAG
CACTATTCTTCTTTAGTTAGGTAGTTCTCCCCCCTCTATGAGACCGTAAGACCCCGGTGGAATCGAAGGCCCGCTTACTAATAGGCAAGAGGGGACCCTT
TCTCGCCCAGCCCTACCTACATCAGTGAAGCTGGAACCGAGGAAGACAATGTTCAACACACATGAGACAAAATGAAGGTATGGGACGGCCAGTTCACCAC
GGAAAGCGAATTCGATCCTTTAGTAGTCTTCTTTGTTCGAAAAATGCGCAGTGGAAAGGGATGCTAGTCGGCTTTGGCGAAGTTGTAGGCCCCAATAGAT
CAGATCAAGAGTGATTCCTCACCTATCCTGTCAGGGGCCAAGTCGAAGGCTCGAGTATAGATTCCCTATGCTCATGTGAACGGCCGGCCCGTAGATCTAA
AAGGATCCATAGGCCCGACCGGAAAGTATGTTTGTCCACGAAAAAAAGTCGTTCATGAGACCTCGAATTCCCACGTTCCAGCCTGCATTATGCCAGCAGG
TCCCACCCCCAATTTCTTGAGTCACCCTTATCTAAAAAAAAA