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Detailed information on CNT30554259

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30592668	Oryza glaberrima	Musa acuminata	33	8.15	86.26	262	forward
CNT30441950	Oryza glaberrima	Aegilops tauschii	16.88	40	99.25	134	reverse complement
CNT30574573	Oryza glaberrima	Vitis vinifera	33.5	6.62	92.86	266	forward
CNT3059207	Oryza glaberrima	Amborella trichopoda	39.04	34.48	80.65	310	forward
CNT30104690	Oryza glaberrima	Oryza rufipogon	58.06	37.12	99.13	461	forward

Expression of CNT30554259

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFVHEKKSFMRPRIPTFQPALCQQVPPPIS*

>peptide 2 (34 aa)
LLTNRQEGTLSRPALPTSVKLEPRKTMFNTHETK*

>peptide 3 (31 aa)
MKVWDGQFTTESEFDPLVVFFVRKMRSGKGC*

>peptide 4 (50 aa)
MRQNEGMGWPVHHGKRIRSFSSLLCSKNAQWKGMLVGFGEVVGPNRSDQE*

>peptide 5 (46 aa)
MLLPTVGPPSPKRRRRSRNNRLSSLGPVVPQLLPWLLPTGIPHSER*

Sequence

>CNT30554259
CCTGCTTACTAATAGGCAAGAGGGGACCCTTTCTCGCCCAGCCCTACCTACATCAGTGAAGCTGGAACCGAGGAAGACAATGTTCAACACACATGAGACA
AAATGAAGGTATGGGATGGCCAGTTCACCACGGAAAGCGAATTCGATCCTTTAGTAGTCTTCTTTGTTCGAAAAATGCGCAGTGGAAAGGGATGCTAGTC
GGCTTTGGCGAAGTTGTAGGCCCCAATAGATCAGATCAAGAGTGATTCTTCACCTATCCTGTCAGGGGCCAAGTCGAAGGCTCGAGTATAGATTCCCTAT
GCTCATGTGAACGGCCGGCCCGTAGATCTAAAAGGATCCATAGGCCCAACCGGAAAGTATGTTTGTCCATGAAAAAAAGTCGTTCATGAGACCTCGAATT
CCCACGTTCCAGCCTGCATTATGCCAGCAGGTCCCACCCCCAATTTCTTGAGTCACCCTTATCTAAAAAAAAGGACGGAGTCTATCTAGGTCATAGGATC
ACTGTATTCAGAGGTCAATTCTCTTTCTTTGACCTCCCACCGTTCACGACATCCCTTGCTTCTCACAAGAACAGCTCCTCGGTGGAGGAGTAGAAGCGCT
GGTCCCCTTCGGTCAAGTGCTTGTGCATGCTCTTACCTACCGTAGGACCTCCGTCCCCGAAGCGAAGAAGGAGGAGCAGGAACAACAGGTTGTCCTCTCT
TGGCCCAGTAGTTCCGCAACTACTACCGTGGTTGTTGCCAACGGGGATCCCCCATTCCGAAAGGTAACGGGGCCGGCCCTTAGGTCCAAAGTTG