Detailed information on CNT30584710


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM15|RA213_ARATH, E-value = 1e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523522Echinochloa crusgalliSetaria italica21.2422.290.77379forward
CNT30563605Echinochloa crusgalliActinidia chinensis8.4131.7185.33150forward
CNT30150787Echinochloa crusgalliBrachypodium distachyon4.4321.5896.279forward

Expression of CNT30584710

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MARGGRDGVSSCMKDSIARIRSSPGPGRLIAAAMEEELIY*

>peptide 2 (34 aa)
MGCARGPRPGFRWRWSWAWMNCIWAGVRWLAGGG*

>peptide 3 (34 aa)
MMRTREIYLEDATSRSELDLPRSNLTGEVVCVGD*

>peptide 4 (53 aa)
MLCTEQLLTFYSNNNIRSWTPVTKTPARSGDQLKQNNKSLLITQRPPAGVQIA*

>peptide 5 (47 aa)
MDDENQRDLPGRRNKSLRARPTSLKPHRRSGVCGRLGGFGLGLLAVG*

>peptide 6 (61 aa)
MGVARLLALPPPLADDEAAAMVAQMACSLASTAGSSGAREAALSGKLSRAASPRRRYAAWS*

Sequence

>CNT30584710
GAACCGAATTAGCAACAGCAATTTTCACAGCACGGGATTCCGAGTAGCATATTAGAATTGAGAGAACAGCAGTTGATTACACCCTAAAGATCCATTTTAC
AGACACCAATGCTGTGCACGGAGCAACTACTGACATTTTACAGTAATAACAACATCCGGAGCTGGACGCCGGTCACAAAAACGCCGGCGAGGTCCGGGGA
CCAACTGAAACAGAACAACAAAAGCCTACTGATTACACAGAGGCCGCCCGCCGGCGTGCAGATTGCCTAAAACCTCATCTGCGCCGGCCGGCCGCCATGG
CTTCCGACAAGCTACCACTCTACTGAATTACATTACATCACTAACAGGTTTCACTGATCGATCGAATAAAAATAAACTAATTGGAGAGCAGCGCGTCCCA
GTCGATCTCGTAGGACGGGTACTTGCGGAGCACGAAGCTCTCCGCCTCGTCCCACGGCACCTCGCCGAAGTTGAGCTGCCCGATCTCCGCCAGCGGCTGC
GCTGCCATCGCCGCCGCCGCCGCCGGTGGTGGTGACGACGACGACATCATCTCGTCGTCCGACCCGGACCCCGAGCCCTCGTCGGAGGAGCTGTTGCTCT
GGTCCGCGTCCGCCTCGAGGACGGGCGCGTTGATGGGCGTGGCCCGGCTCTTGGCCTTGCCGCCGCCCTTGGCGGACGACGAGGCGGCGGCAATGGTGGC
GCAGATGGCCTGCAGCTTGGCGTCGACGGCGGGGTCGAGCGGCGCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGCCGCGCCGCGTCGCCGCGGAGGCGG
TACGCCGCCTGGTCGTAGGCGAGCGCGGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGGCGGGTGCGGTTGCGGGGGAGGCGGATCTCGGCGACCC
ACTTGCCCCAGTGGCGCTGCCGCACGCCGCGGTAGAGCTTCTGGGGGCGCGGCTGCGCCGGCGCCGGCGCCCACGGCGGCGGCACGGGGAGGGCCGGCTT
CATGGGCTGCGCGCGCGGGCCGAGGCCCGGGTTCCGCTGGAGGTGGAGCTGGGCCTGGATGAACTGCATCTGGGCCGGGGTCAGGTGGCTCGCCGGCGGG
GGGTAGGGGAGCCCGTGGGCCCCGGCGGGGAACGGCGGGAAGGCGGCGGGGGCCGGCGGCATGGCCAGAGGAGGCAGGGATGGTGTGTCTTCTTGCATGA
AGGACTCCATCGCTCGCATCAGATCATCGCCGGGCCCCGGAAGATTAATAGCGGCGGCCATGGAAGAAGAATTAATCTACTAGATTTTTTTGGGGGGTTT
TTCTTTTGGGGAAAATAAAAAAAAGAATAAATAGCCTTGTTCTTAGCTAAAATCAAAGAACAGGCAGGACAAATATGGTGGTTTTACAGTCTAGACAGAT
CTATACTGAACAAAGGAGCACAAAGAGGTGTGGAAAAAGAACCTCTCTTGGCTAACTACAGCTGCCTATTTTTTGCACAACAAAAGGGAATGGATCAGCG
AGACCAGAAACTAAAAGGGTCTGGAGCTCTGCTACGGAGACCAAGAAGAACAGAAAGGTGAAGATGGATGATGAGAACCAGAGAGATTTACCTGGAAGAC
GCAACAAGTCGCTCAGAGCTAGACCTACCTCGCTCAAACCTCACCGGAGAAGTGGTGTGTGTGGGCGATTAGGTGGCTTTGGATTGGGCTTGCTGGCTGT
TGGGTGATGAATTCCGGCGGTGGTGGTGGTGGCAGTGGAACAAGATGGCTGGTGATTTGGGTTGAGGAGTTCAGGGGACACCAC