Detailed information on CNT30523522


BLAST search results

BLAST vs Swiss-Prot:
sp|O65665|ERF60_ARATH, E-value = 3e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30563605Setaria italicaActinidia chinensis8.7931.7184.67150forward
CNT30470380Setaria italicaSaccharum spontaneum6.6232.187.61113forward
CNT30366838Setaria italicaSorghum bicolor7.6222.2683.85130forward
CNT30584710Setaria italicaEchinochloa crusgalli48.3946.387.53826forward

Expression of CNT30523522

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MGWREGLPGGRKKSLRVRPTSLRPHRRWCACLWAIMALDWARWIGGGGGSEEGLVYGLRSSEGHHGCSF

>peptide 2 (71 aa)
MEGDQEQEQIGEDRWDGERVYLEDARSRSELDLPRSDLTGDGVRVCGRLWLWIGLGGLVVVEEVKRAWCMG*

>peptide 3 (97 aa)
MARGGDGASSCMKDSIARIRSSPAGPGRFIAAAIEEQSTWIFYGGFFFVFGGIKERIIALFLAKIKEQAGQVWLSHTDLLLNGHRSTRRCGKRASLG*

>peptide 4 (29 aa)
MDTEAQGGVEKEPLLANYLPTTGVFHNKG*

>peptide 5 (61 aa)
MLCTHGTFYSNIRSRTPVTKTPARSGDQQERKSTWLQITHGPRRAECLKPHLQHRPWWMTN*

>peptide 6 (87 aa)
MAVPHRSTVEWTQKHKEVWKKSLSWLTTYLLLEYSTTRGEKEKNQRPETKRLWSSLLWRETKNKNRSVKIDGMERGFTWRTQEVAQS*

>peptide 7 (58 aa)
MGVALLLALPPLDDAAAMVAQMACSLASTAESSGALEAALSGKLSRAASPRRRYAAWS*

>peptide 8 (30 aa)
MPKTSSAAPAMVDDKLTKLHSTTEITSLAD*

Sequence

>CNT30523522
GACGAAAACAATCTCAGTCGGTTGATGATGAGGAGACAGATTCTTACAATTAACAACAGCAGTTGATTACAACCTAAAGATCCCAACTTTTTTACAGACA
GACCAGTACACCAATGCTGTGCACCCACGGAACATTTTACAGTAACATCCGGAGCAGGACGCCGGTCACAAAAACGCCGGCGAGGTCCGGGGACCAACAA
GAACGGAAATCTACTTGGCTACAAATTACACACGGGCCGCGCCGTGCAGAATGCCTAAAACCTCATCTGCAGCACCGGCCATGGTGGATGACAAATTGAC
AAAGCTACACTCTACTACTGAAATTACATCACTGGCAGATTGATTGGTCGATGAACAGCTAGTTGGCGAGCAGCGCGTCCCAGTCGATCTCGTAGGACGG
GTACTTGCGGAGCACGAAGCTCTCGGCCTCGTCCCACGGCACCTCGCCGAAGTTCAGCTGCCCGATCTCCGCCAGCGGAGCCGCCGGAGCCGGAGCCCTC
GTCGGAGCTGCTGTTGCTCGCCGCCGCCTCCGCGTCCACGACGGGGGCGTTGATGGGCGTGGCCTTGCTCTTGGCCCTGCCGCCCTTGGACGACGCGGCG
GCGATGGTGGCGCAGATGGCCTGCAGCTTGGCGTCGACGGCGGAGTCCAGCGGCGCCCTGGAGGCGGCGTTGTCGGGGAAGTTGAGCCGCGCCGCGTCGC
CGCGGAGGCGGTACGCCGCCTGGTCGTAGGCCAGCGCGGCCTCCTCGGCGGTGTCGAAGGTGCCCAGCCACAGGCGGGTGCGGTTGCGGGGGAGGCGGAT
CTCGGCGACCCACTTGCCCCAGTGGCGCTGCCGCACGCCGCGGTACAGCTTCTGCGGCCGCTGCTGCTGCGCCGGCGCCGGCGCGGGGGGCACGGGGACC
GCCGGCTTCATGGGCTGCGCCCGCGGGCCGAGACCCGGGTTCCGCTGAAGGTGGAGCTGGGCCTGGATGAACTGCATCTGGGCCGGGGTCAGGTGGGTCG
CCGGAGGGTAGCTGAGCCCGTGGGCCCCGGCGGGGAACGGCGGCGGCGGAGGGAAGGTGGCGGGCGCCGGCTGCATGGCCAGAGGAGGGGATGGAGCGTC
TTCTTGCATGAAGGACTCCATTGCTCGCATCAGATCCTCGCCGGCGGGCCCAGGAAGATTTATAGCAGCGGCCATCGAAGAACAATCTACTTGGATTTTT
TATGGGGGATTTTTCTTTGTCTTTGGGGGAATAAAAGAAAGAATAATAGCCTTGTTCTTAGCTAAAATCAAAGAACAGGCAGGACAGGTATGGCTGTCCC
ACACAGATCTACTGTTGAATGGACACAGAAGCACAAGGAGGTGTGGAAAAAGAGCCTCTCTTGGCTAACTACCTACCTACTACTGGAGTATTCCACAACA
AGGGGTGAAAAAGAAAAAAATCAGAGACCAGAAACTAAAAGGCTCTGGAGCTCTCTGCTATGGAGGGAGACCAAGAACAAGAACAGATCGGTGAAGATCG
ATGGGATGGAGAGAGGGTTTACCTGGAGGACGCAAGAAGTCGCTCAGAGTTAGACCTACCTCGCTCAGACCTCACCGGAGATGGTGTGCGTGTTTGTGGG
CGATTATGGCTTTGGATTGGGCTCGGTGGATTGGTGGTGGTGGAGGAAGTGAAGAGGGCTTGGTGTATGGGTTGAGGAGCTCGGAGGGACACCACGGCTG
CTCTTTT