Detailed information on CNT3058427


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020944Amborella trichopodaCitrullus lanatus22.6716.3586.7668forward
CNT30441637Amborella trichopodaAegilops tauschii34.6728.4982.69104forward
CNT30253145Amborella trichopodaAvena sativa34.6733.6682.69104forward
CNT30715150Amborella trichopodaMalus domestica golden32.6740.584.6998forward
CNT30355032Amborella trichopodaLactuca sativa35.3312.9683.02106forward
CNT30426944Amborella trichopodaPapaver somniferum34.3334.4584.47103forward

Expression of CNT3058427

Peptides detected in this lncRNA

>peptide 1 (63 aa)
LGREVTDDICSISSPQSKETLFLDCSAKAVSDTLVRLWPPRQASKNEFCSVVLPYTAGNGFVS*

>peptide 2 (40 aa)
MDLYHEQWPCDGCCRSLGLASLGIVLSRGKIAQKLSGRWMD

Sequence

>CNT3058427
CCTGGGTAGGGAAGTAACGGATGACATTTGCAGTATTTCCTCTCCACAGAGCAAGGAAACCCTCTTCCTTGATTGTTCGGCCAAAGCAGTCTCCGATACC
CTTGTAAGGCTCTGGCCACCTCGGCAAGCCTCCAAGAACGAGTTTTGCAGTGTCGTATTGCCATATACAGCTGGCAATGGATTTGTATCATGAACAATGG
CCATGCGATGGATGCTGCCGCAGTTTGGGGCTTGCATCTTTGGGGATAGTCTTGAGTAGAGGTAAGATTGCCCAAAAACTGTCTGGGCGATGGATGGATG