Detailed information on CNT30340485


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 3e-120

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30583035Eragrostis tefEchinochloa crusgalli56.8952.7591.56557forward

Expression of CNT30340485

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MLRRSNTGEEELYINLPCAIQYPVSTRRSIVIMLQAAGWRCMNRDAVPQTLHHHQPARTNTHISSLNCTDGQQLATQRARKKGSTAQSF*

>peptide 2 (74 aa)
MTPVLNHGSAVSAGIRPSLPNTSGAMAPAAPSIAKRPLITSPYASHLGSMKPPVPSGSDRPNGSKPKSPGSLQQE

>peptide 3 (29 aa)
MQCLKRFTIISQREPTHTSRRSIAPTGSS*

>peptide 4 (74 aa)
MASMASLPFLISLSLSSLSDFSSLPNPSGLKIGPPGNFSRPRKYCLPMDPGLYQSCSRRCSAKPMSAISKTKSV*

Sequence

>CNT30340485
CTCAAATGATACCTCACGCTCCTTTTAACCATTCCCTGGCAAATTAAATGATGTTCCTCTTGTTACATGATACCGCGCCTAGGTTTGATAAGTCGAAGTA
ATTGTTCGCAATGTTGAGACGTAGTAACACGGGGGAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGACGATCAATT
GTTATAATGTTACAGGCAGCAGGCTGGCGATGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAGCCAGCGCGAACCAACACACACATCT
CGTCGCTCAATTGCACCGACGGGCAGCAGCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTACAGCGCAATCTTTCTAGTGGAACTTGAGGCTGGTGAG
CACGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGTAGGGGCCTTCGCCGGTGACGAGTCCCTGGATGAAGTAGCCCAGGATGGCGAGC
ATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTGAGCGACTTCTCGTCCTTGCCGAATCCGAGCGGGTTGAAGATCGGGCCGCCGGGGA
ACTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGACCCCGGGTTGTACCAGTCCTGCAGCCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATCTCGAA
GACGAAGAGCGTGTAGGGGTCGGCCCAGTAGTTGTAAGTGCCGGCCGGCGGGATGACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGCCGGGATCAGG
CCCAGCTTGCCGAACACCTCCGGCGCGATGGCGCCCGCCGCGCCAAGCATCGCGAAACGCCCGTTGATCACCTCCCCGTACGCCAGCCACTTGGGCTCGA
TGAAACCGCCGGTGCCCTCTGGGTCCGACAGGCCCAACGGGTCGAAGCCGAAGTCGCCGGGCAGCCTGCAACAGGAACG