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Detailed information on CNT30576926


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694900Oryza barthiiOryza sativa52.7178.9597.14525forward
CNT30554256Oryza barthiiOryza glaberrima96.5910098.86962forward
CNT30117201Oryza barthiiOryza nivara97.6999.1898.46973forward

Expression of CNT30576926

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLTLDSTQAV

>peptide 2 (30 aa)
NRYNFIKQPRNSDTQGHILFLFMVYMYAHT*

>peptide 3 (33 aa)
MQWQAPNGSTVRGLISSSRCHYKLYYSLLTVHKL

>peptide 4 (35 aa)
MLYYKKHACSDATSLRKHIDSHMDTYTSEQHMTNT*

Sequence

>CNT30576926
AACAGATACAATTTCATAAAACAGCCCAGAAATAGTGACACACAGGGACACATTCTCTTTTTATTCATGGTATATATGTACGCACATACATAACACACGT
GCATATATATGCTTTATTATAAGAAGCACGCCTGCTCAGATGCAACATCATTAAGAAAACACATAGATAGCCACATGGACACATACACCAGTGAACAACA
CATGACAAACACATAGATAGTCACTAGAGCAATACTACATACCAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCCCGGGCACA
ATTACAGCTATTGCTGGTGAAAGAGGTGGTGGCTTTGGCAGAGATCGCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTGGCTCCGGCTTAG
GATTAGGATTTGGCTTGGGGTTAGGACTTGGCTCAGGTTTAGGTTCAGGCTTTGGCTCTGGCTTAGGATTTGGGCTTGGCTCCGGTTGTGGCTCAGGCTT
TGGATTTGGTTTTGGGTCAGCTTTGGGGCTAGGTTGCGGGTTCGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGCGTTGGTTTTGGGTCAGGCTGTGGG
TTCGGCTGAGGATCTTGTTTTGGGTTAGGTTGCGGCGTTGGTTTTGGGTCAGGTTGTGGGTTCGGTTGAGGATCTTGTTTTGGGTCAGGCTGTGGTGTAG
TTTTCGGGTCAGGCTGCGGTGATGGTTTTGGATCTGGCTGTGGGTTAGGTTGAGGGTTAGGCTGTGGACTGGGTTTTGTCTCTCGTTGTGGTTTTGGTGT
TGGGTCAGGTTTAGGCTTGGGATCTGCTGGCTTTGGATCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATG
GCAAGCGCCAAATGGAAGCACAGTGAGAGGATTGATCTCCTCATCTCGTTGTCACTACAAACTCTACTACTCACTCTTGACAGTACACAAGCTGTG