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Detailed information on CNT30117201


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694900Oryza nivaraOryza sativa52.577.4498.06515forward
CNT30554256Oryza nivaraOryza glaberrima97.4599.3898.33956forward
CNT30596669Oryza nivaraOryza meridionalis81.8683.3992.03803forward
CNT30370730Oryza nivaraOryza glumipatula91.6490.6294.77899forward
CNT30576926Oryza nivaraOryza barthii99.1897.6998.46973forward

Expression of CNT30117201

Peptides detected in this lncRNA

>peptide 1 (62 aa)
PEIVTHRDTFSFYSWYICTHIHNTCIYMLYYKKHACSDATSLRKYIDSHMDTYTSEQHTTNT*

>peptide 2 (35 aa)
MQWQAPNGSTVRGLISSSRCHYKLYYSLLTVHKLW*

>peptide 3 (44 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLTLDSTQAVVAR

Sequence

>CNT30117201
GCCCAGAAATAGTGACACACAGGGATACATTCTCTTTTTATTCATGGTATATATGTACGCACATACATAACACATGCATATATATGCTTTATTATAAGAA
GCACGCCTGCTCAGATGCAACATCATTAAGAAAATACATAGATAGCCACATGGACACATACACCAGTGAACAACACACGACAAACACATAGATAGTCACT
AGAGCAATAGTACATACCAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCCCGGGCACAATTACAGCTATTGCTGGTGAAAGAG
GTGGTGGCTTTGGCAGAGATCGCTCTGGCTGAGGCTTGGGTTCTAGCTTAGGATCAGGCTGTGGCTCTGGCTTAGGATTAGGATTTGGCTTGGGGTTAGG
ACTTGGCTCAGGTTTGGGTTCAGGCTTTGGCTCTGGCTTAGGATTTGGGCTTGGCTCCGGTTGTGGCTTAGGCTTTGGATTTGGTTTTGGGTCAGCTTTG
GGGCTAGGTTGCGGGTTCGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGCGTTGGTTTCGGGTCAGGCTGTGGGTTCGGCTGAGGATCTTGTTTTGGGT
TAGGTTGCGGCGTTGGTTTTGGGTCAGGTTGTGGGTTCGGTTGAGGATCTTGTTTTGGGTCAGGCTGTGGTGTAGGTTTTGGGTCAGGCTGCGGTGATGG
TTTTGGATCTGGCTGTGGGTTTGGTTGAGGGTTAGGCTGTGGACTGGGTTTTGTCTCTGGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGCTTGGGATCT
GCTGGCTTTGGATCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAAGCACAGTG
AGAGGATTGATCTCCTCATCTCGTTGTCACTACAAACTCTACTACTCACTCTTGACAGTACACAAGCTGTGGTAGCTAGGT