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Detailed information on CNT30554256

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694900	Oryza glaberrima	Oryza sativa	50.73	73.38	96.52	488	forward
CNT30596669	Oryza glaberrima	Oryza meridionalis	83.89	83.8	91.95	807	forward
CNT30370730	Oryza glaberrima	Oryza glumipatula	90.85	88.1	94.16	874	forward
CNT30107505	Oryza glaberrima	Oryza longistaminata	76.3	68.03	98.37	734	forward
CNT30102548	Oryza glaberrima	Oryza rufipogon	76.3	79.09	97.96	734	forward
CNT30576926	Oryza glaberrima	Oryza barthii	100	96.59	98.86	962	forward
CNT30117201	Oryza glaberrima	Oryza nivara	99.38	97.45	98.33	956	forward

Expression of CNT30554256

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MQWQAPNGSTVRGLISSSRCHYKLYYSLL

>peptide 2 (44 aa)
NSPEIVTHRDTFSFYSWYICTHIHNTRAYICFIIRSTPAQMQHH*

>peptide 3 (35 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLTL

>peptide 4 (35 aa)
MLYYKKHACSDATSLRKHIDSHMDTYTSEQHMTNT*

Sequence

>CNT30554256
AAAACAGCCCAGAAATAGTGACACACAGGGATACATTCTCTTTTTATTCATGGTATATATGTACGCACATACATAACACACGTGCATATATATGCTTTAT
TATAAGAAGCACGCCTGCTCAGATGCAACATCATTAAGAAAACACATAGATAGCCACATGGACACATACACCAGTGAACAACACATGACAAACACATAGA
TAGTCACTAGAGCAATAGTACATACCAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCCCGGGCACAATTACAGCTATTGCTGG
TGAAAGAGGTGGTGGCTTTGGCAGAGATCGCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTGGCTCCGGCTTAGGATTAGGATTTGGCTTG
GGGTTAGGACTTGGCTCAGGTTTGGGTTCAGGCTTTGGCTCTGGCTTAGGATTTGGGCTCGGCTCCGGTTGTGGCTTAGGCTTTGGATTTGGTTTTGGGT
CAGCTTTGGGGCTAGGTTGCGGGTTCGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGCGTTGGTTTTGGGTCAGGCTGTGGGTTCGGCTGAGGATCTTG
TTTTGGGTTAGGTTGCGGCGTTGGTTTTGGGTCAGGTTGTGGGTTCGGTTGAGGATCTTGTTTTGGGTCAGACTGTGGTGTAGTTTTCGGGTCAGGCTGC
GGAGATGGTTTTGGATCCGGTTGTAGGTTTGGTTGAGGGTTAGGCTGTGGACTGGGTTTTGTCTCTCGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGCT
TGGGATCTGCTGGCTTTGGATCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAA
GCACAGTGAGAGGATTGATCTCCTCATCTCGTTGTCACTACAAACTCTACTACTCACTCTTG