CANTATAdb - search

Detailed information on CNT30694900

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30554256	Oryza sativa	Oryza glaberrima	73.38	50.73	96.52	488	forward
CNT30370730	Oryza sativa	Oryza glumipatula	77.14	51.71	95.71	513	forward
CNT30576926	Oryza sativa	Oryza barthii	78.95	52.71	97.14	525	forward
CNT30117201	Oryza sativa	Oryza nivara	77.44	52.5	98.06	515	forward

Expression of CNT30694900

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MQWQAPNGSTVRGLISSRCHYKLYYSLLTVHKLW*

>peptide 2 (34 aa)
MASAKWKHSERIDLISLSLQTLLLTLDSTQAVVAR

Sequence

>CNT30694900
GGCACAATTATAGCTATTGCTGGTGAAAGAGGTGGTGGCTTTGGCAGAGATGGCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTGGCTCCG
GCTTAGGATTAGGATTTGGCTTGGGGTTAGGACTTGGCTCAGGTTTGGGTTCAGGCTTTGGATTTGGTTTTGGGTCAGCTTTGGGGCTAGGTTGCGGGTT
CGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGCGTTGGTTTTGGGTCAGGCTGTGGGTTCGGCTGAGGATCTTGTTTTGGGTTAGGTTGCGGCGTTGGT
TTTGGGTCAGGTTGTGGGTTCGGTTGAGGATCTTGTTTTGGGTCAGGCTGTGGTGTAGGTTTTGGGTCAGGCTGCGGTGATGGTTTTGGATCTGGCTGTG
GGTTAGGTTGAGGGTTAGGCTGTGGACTGGGCTTTGTCTCTGGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGATTGGGATCTGCTGGCTTTGGATCAGA
TTTAGCTTCAATCACGCGTCCATTGGCAATGTGATCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAAGCACAGTGAGAGGATTGATCTC
ATCTCGTTGTCACTACAAACTCTACTACTCACTCTTGACAGTACACAAGCTGTGGTAGCTAGGTG