Detailed information on CNT30576482


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693530Oryza barthiiOryza sativa55.0310099.34602forward
CNT30553660Oryza barthiiOryza glaberrima96.894.8997.171059forward
CNT30370351Oryza barthiiOryza glumipatula83.8287.3394.87917forward
CNT30117757Oryza barthiiOryza nivara54.1110099.32592forward

Expression of CNT30576482

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEAARSKMGNRMKLMKEAMAQISGKNILNFYKFL*

>peptide 2 (38 aa)
MATSASSSQCATPPVSSNRREQASQASVDASPTAKQAE*

>peptide 3 (77 aa)
MPAGMNYLAGTGIVPDRILAVSWALGSYRCCPQTVPVKFVNSLLVLLINLIRLRSDGSSAFENGESDEADERGDGPN*

>peptide 4 (94 aa)
TYYKNHHLKTLEFSSLPFIAAASPSLRLFSSTAAKLTREVAAGRGSRRTWEGRHRAMGGHRREGCHRHHGRSAREVRSPLGGAPREVVAGGSTL*

Sequence

>CNT30576482
CAACTTATTATAAAAACCACCATCTAAAAACCCTAGAATTTTCTTCTCTTCCCTTCATAGCCGCCGCATCTCCTTCTCTTCGACTTTTCTCCTCCACAGC
CGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCCAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCAT
AGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTC
GCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCT
CCTCTGCGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCA
GTGTGCTACTCCACCGGTCAGCAGCAATCGGCGTGAGCAAGCCTCACAGGCTTCTGTAGATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAG
GAAACTTGTGTAATTGAAGTTTGTTGATTATGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAATGTTTGTATTGTTGACT
ATCTCTGCGTGTGGAGAATTGTCGGTCATGTAGTAAGGGGCATGCCCGCAGGCATGAATTACCTCGCGGGCACGGGCATCGTGCCCGACCGCATCTTAGC
TGTGTCTTGGGCCCTGGGCTCTTATCGTTGCTGCCCACAAACCGTGCCAGTTAAATTTGTTAATAGCTTGTTAGTTTTACTCATAAATCTTATCCGACTG
CGAAGCGATGGAAGCAGCGCGTTCGAAAATGGGGAATCGGATGAAGCTGATGAAAGAGGCGATGGCCCAAATTAGTGGCAAAAACATCTTAAATTTTTAT
AAATTTTTATAATAGTAGAGAGACAGAGAAGAGGAGAGGAGAAGAATGAAAAAGGAAAAAAAAATTAGGCCAATAATTTAGGACATAATGAAAC