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Detailed information on CNT30370351


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693530Oryza glumipatulaOryza sativa57.43100.1798.51603forward
CNT30553660Oryza glumipatulaOryza glaberrima92.9587.4697.03976forward
CNT30576482Oryza glumipatulaOryza barthii87.3383.8294.87917forward
CNT30117757Oryza glumipatulaOryza nivara56.48100.1798.65593forward

Expression of CNT30370351

Peptides detected in this lncRNA

>peptide 1 (48 aa)
FSTDRFLIRSKLVTNGHTGTSMGSHYPCPLRLFTREHQLTCGPSINLV*

>peptide 2 (38 aa)
MGGHRREGCHRHHGRSAREVRSPLGGAPREVVAGGSTL*

>peptide 3 (53 aa)
MNYLAGTDMGSHCPCPSCPTASLAVSWALWPLSLLPQTVPVKFVNSLLVLLINL

>peptide 4 (38 aa)
MATSASSSQCATPPVSSNRREQASQASVDASPTAKQAE*

Sequence

>CNT30370351
TTTAGTACCGATAGGTTTCTTATTAGGTCAAAACTTGTAACAAACGGGCACACGGGCACGAGCATGGGTAGTCACTACCCATGCCCGCTTCGCCTATTTA
CCCGTGAACATCAACTGACATGTGGGCCCTCAATCAACTTAGTATAAAAACCACCATCTAAAAACCCTAGAATTTTCTTCTCTTCCCTTCATAGCCGCCG
CATCTCCTTCTCTTCGACTTTTCTCCTCCACAACCGCCAAGCTGACGCGGGAGGTCACCGCCGGGAGGGGCTCCAGGCGGACATGGGAGGGGTGCCACCG
TGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGGGCGCCACGGGAGGTCGTC
GCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTATCCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCGACGTCTCCAACCGCGCCTCCCT
CCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCTGGCGACGTCCTCCCCTGCGCTGAGCAAGTGA
TTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTAGATGCAT
CCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTC
TTATTGTTGAACTTATGATGTTTGTATTGTTGACTGTCACTGCTTGTGGAGAATTGTCCGTCATGTAGTAACGGGCATCCCCGCAGGCATGAATTACCTC
GCGGGCACGGACATGGGTAGTCACTGCCCGTGCCCATCGTGCCCGACCGCATCCCTAGCTGTGTCTTGGGCCCTGTGGCCCTTATCGTTGCTGCCACAAA
CCGTGCCAGTTAAATTTGTTAATAGCTTGTTAGTTTTACTCATAAATCTT