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Detailed information on CNT30553660


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693530Oryza glaberrimaOryza sativa53.9410099602forward
CNT30370351Oryza glaberrimaOryza glumipatula87.4692.9597.03976forward
CNT30576482Oryza glaberrimaOryza barthii94.8996.897.171059forward
CNT30117757Oryza glaberrimaOryza nivara53.0510098.99592forward

Expression of CNT30553660

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MATSASSSQCATPPVSSNRREQASQASVDASPTAKQAE*

>peptide 2 (38 aa)
MGGHRWEGCHRHHGRSAREVRSPLGGAPREVVAGGSTL*

>peptide 3 (34 aa)
MEAARSKMGNRMKLMKEAMAQISGKNILNFYKFL*

Sequence

>CNT30553660
CCCATGCCCGCTTCGCCTATTTACCCGCGAACATCAACTGACATGTGGGCCCTCAATCAACTTATTATAAAAACCACCATCTAAAAAACCCTAGAATTTT
CTTCTCTTCCCTTCATAGCCGCCGCATCTCCTTCTCTTCGACTTTTCTCCTCCACAGCCGCCAAGCTGACGCGGGAGGTTGCCGCCGGGAGGGGCTCCAG
GCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCTGGGAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTG
GGAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATC
AACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGCGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGT
CCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAATCGGCGTGAGCAAGC
CTCACAGGCTTCTGTAGATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTATGTAATTGTGCT
AAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAATGTTTGTATTGTTGACTGTCTCTGCGTGTGGAGAATTGTCGGTCATGTAGTAAGGGGCA
TGCCCGCAGGCATGAATTACCTCGCGGGCACGGGCATGGGTAGTCACTACCCGTGCCCGTCGTGCCCGACCGCATCCTAGCTGTGTCTTAGGGCCCTGGG
CTCTTATCGTTGCTGCCCACAAACCGTGCCAGTTAAATTTGTTAATAGCTTGTTAGTTTTACTCATAAATCTTATCCGACTGCGAAGCGATGGAAGCAGC
GCGTTCGAAAATGGGGAATCGGATGAAGCTGATGAAAGAGGCGATGGCCCAAATTAGTGGCAAAAACATCTTAAATTTTTATAAATTTTTATAATAGTAG
AGAGACTGAGAAGAGG