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Detailed information on CNT30576220


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30362056Oryza barthiiSorghum bicolor12.530.3493.6125reverse complement
CNT30596676Oryza barthiiOryza meridionalis1147.4196.36110reverse complement
CNT30101346Oryza barthiiOryza rufipogon17.820.4698.31178reverse complement

Expression of CNT30576220

Peptides detected in this lncRNA

>peptide 1 (72 aa)
CNISNLAQSHVEINIWLRACRWRLGCMYTTPDRPICDGLLVMDQSASSEVTSSMTGTINHVIDRAQENNSSQ*

Sequence

>CNT30576220
GTGTAACATAAGTAACCTTGCTCAATCTCACGTGGAAATAAATATTTGGTTACGTGCCTGTCGATGGAGACTAGGATGCATGTACACTACGCCAGATCGG
CCTATCTGTGATGGTCTATTAGTGATGGACCAAAGTGCCTCGTCGGAGGTAACCTCATCTATGACGGGTACAATAAATCACGTCATAGATAGGGCTCAAG
AAAATAACTCGTCACAGTAGGAAGGGCAGTCACCACAACATGGGTATACAACATTTAATCCCCAGTCTATTGTAAAAAGGAGGTAAGAAAAAAACCAAGG
AATTGATCATCCAGGCGTGCCTATTCGGCTTGCTTGATAGGCTGGCGCATAACCCCTATTTCTCGACCCAGATTCACAACCGAACCTATTTCTCATCTTC
ATCCCGACCTATCTATATGTGAAACTCCGCCCGAATCCTCGTAGTACTAAGTCGTGGCTTACAAGCTAGCCCGTGCAGCCGTTTTCTTGCTGGGGCGGAC
ACGGATTTCTCTCTAAAGGCGAAGACTTAGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGACTCCGGATCCGCGCACCTGCTGACACCAAGT
ACTCATCTGTGACGGATCTATATAAGGACCCGGCGCACAACATCTTTGACGTGTCTACATATATACCCGTCACTGATGACCTCTTACCTGTGACGGGTTT
TAAGTTTGTAACCCGTCACAGGTGAGATATCTCACCTCAAACGTGTTGGATTTTTATACCCGTCACTGGTAACTTAAAAAAAAAGAAACCCCTACCTCCA
ACCCAGGGGGCCCACCACCCACCCACATCGGTCTTATCTCCTCTTCTCTTCTCTCTTCCTCCTCCCCACCACTCTCTCCTCTTCCTCAATTCTCTCCCTC
ACTTCCTCCCGACCTCCCGCCTCCACCTCTCTCTTCTTCCTCAACCGCCTCCACCTCCCACGTCTCGCCGCCTCCCGACCGCCGGCCGCCTCCACCTCCC