Detailed information on CNT30362056


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671914Sorghum bicolorSetaria viridis96.8423.9992.98399reverse complement
CNT30441792Sorghum bicolorAegilops tauschii33.9822.4793.57140reverse complement
CNT30605073Sorghum bicolorGossypium raimondii24.276.5898100forward
CNT30346086Sorghum bicolorEragrostis tef33.9818.4797.14140reverse complement
CNT30596676Sorghum bicolorOryza meridionalis26.747.4196.36110forward
CNT30356360Sorghum bicolorLactuca sativa24.5110.3498.02101reverse complement
CNT30106724Sorghum bicolorOryza longistaminata96.644.7794.72398reverse complement
CNT30103741Sorghum bicolorOryza rufipogon60.6847.5392.4250forward
CNT30576220Sorghum bicolorOryza barthii30.3412.593.6125reverse complement

Expression of CNT30362056

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFACWAECSPTSESSPLEKNSCPPQQENGCTLLY*

>peptide 2 (39 aa)
MRMSGSATAFALIPCFKTKGFSPPFVGRQRRELRLWKRQ*

>peptide 3 (42 aa)
GRLRRLRFTCESASKGVSRCAEPEPACSPAGPSVRPLQSLRL*

Sequence

>CNT30362056
GGGGAAGGCTAAGACGACTTCGGTTCACATGTGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCGGCATGTTCGCCTGCTGGGCCGAG
TGTTCGCCCACTTCAGAGTCTTCGCCTTTAGAGAAAAATTCGTGCCCGCCCCAGCAAGAAAACGGCTGCACGTTATTGTACTAACGCGCGACGGAGCAAG
AGTATGCGCATGTCCGGAAGCGCAACGGCTTTCGCGCTCATCCCTTGCTTCAAAACGAAAGGTTTTAGCCCTCCGTTTGTTGGTCGCCAAAGACGAGAGC
TTCGCCTTTGGAAGCGCCAGTAGCGTAGGGCGACCGGGCCAGCCGAGCCTCTCTGAATTAGTTGACGGCTTTGATGACTCGATGGTGAATATTAAGGAAA
GGAGCTTTCAGG