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Detailed information on CNT30101346


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004790, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30576220Oryza rufipogonOryza barthii21.1518.498.37184reverse complement

Expression of CNT30101346

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKMRNRFGCESGSRNGGYAPAYQASRIGAPG*

>peptide 2 (39 aa)
MFHVCFCKSFFFTGPARLIKRIWCLCQVGKPYRSCPNKE*

Sequence

>CNT30101346
GCTAGTTGAGCAGTAAAATAGAAATAAGAGCTGCTAAAACAATATCCTTTTTCTTAAAGTTCCTACGATGCTAGTTTTTAACAGGCATATACACTCAGAT
AATGCAGCAAGAGTTCCCCACTACCAAGTAAGCTCTTTCTACTTGTTCACCTAGATGAAAACTACCTAGCTTTGTTTGGCTACTTTTTTTATTGGCTAGT
GTGATTTTATATCTTAGGCTAGACTCGCTTGAGCTGCCTTACATTAGTGGGGCTATATGTGAATCGCAGAGGTCTGTAAATTAAGGCAATAGGCGGGCAC
ATTTGAAATGCAGCAGTAGTGAGCTCCTATAGAAAATCAAAAATTCAATAAAAGGTCATAATGGTCGGAAGCTGTTCACTACTTCAGAACCATCCAGAAG
GCAAGAGAAAAAAGCACCTGAGGTCAGGTGTTTCTTAGGAGTTCAATATGTTTCATGTGTGTTTTTGCAAATCTTTTTTCTTCACTGGTCCTGCACGCTT
GATAAAAAGGATCTGGTGTCTATGCCAGGTTGGTAAACCATATAGATCTTGCCCAAACAAGGAGTAGGGGCTAGCTTGTAAGCCACGACTTAGTACTACG
AGGATTCGGGCGGAGTTTCACATATAGATAGGTCGGGATGAAGATGAGAAATAGGTTCGGTTGTGAATCTGGGTCAAGAAATGGGGGTTATGCGCCAGCC
TATCAAGCAAGCCGAATAGGCGCGCCTGGATGATCAATTCCTTGGTTTTTTCTTACCTGACCGAGAGACGGGGCCGATAGAGCATATTCCGGACAAGTTG
GTTCGATTCGCAGTTCACTTTCTATAAGATAACAAAACAGCAGACCCGCCCCATGCTTTTCTTTACGCTG