Detailed information on CNT30575830


BLAST search results

BLAST vs Swiss-Prot:
sp|A2WLS0|MT3A_ORYSI, E-value = 4e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30240521Oryza barthiiAvena sativa27.0420.5189.5896reverse complement
CNT30453268Oryza barthiiSaccharum spontaneum20.857.9390.5474reverse complement
CNT301037Oryza barthiiZea mays25.0712.8887.6489reverse complement
CNT30340085Oryza barthiiEragrostis tef31.5523.3891.07112forward
CNT30498420Oryza barthiiDigitaria exilis22.2510.9791.1479forward

Expression of CNT30575830

Peptides detected in this lncRNA

>peptide 1 (90 aa)
HRDRNSRLITQTAYALCICQSRYGSFIIHSSHARTHDHTDDNSQINGFLAVARVALAAGAAAAAVGGLAGLGGRLEVRLLRRDAEHDATA*

>peptide 2 (39 aa)
QGQKQQIDHTNCICTMHMPEQIWLLYYSFITRTDTRSHR*

>peptide 3 (31 aa)
MHYAYARADMAPLLFIHHTHGHTITQMIIAK*

Sequence

>CNT30575830
CACAGGGACAGAAACAGCAGATTGATCACACAAACTGCATATGCACTATGCATATGCCAGAGCAGATATGGCTCCTTTATTATTCATTCATCACACGCAC
GGACACACGATCACACAGATGATAATAGCCAAATAAATGGCTTCTTAGCAGTTGCAAGGGTTGCACTTGCAGCTGGAGCCGCAGCCGCAGCCGTGGGCGG
TCTCGCCGGACTCGGCGGCCGCCTCGAAGTGCGCCTTCTCCGGCGCGACGCCGAGCACGACGCCACAGCTTGATCCACAGCTGCAAGACATCTTGTCGAA
ATCTATAAGCTCAAGCAACTCAAGATGACAAGGAGATGAAGGGCTTTGAGATGAT