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Detailed information on CNT30573765


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 6e-18

BLAST vs NONCODE:
NONVVIT001317, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30310285Vitis viniferaCamelina sativa8.7227.488.3360forward
CNT30605275Vitis viniferaGossypium raimondii13.3730.3684.7892forward
CNT3030395Vitis viniferaTheobroma cacao13.9538.482.2996forward

Expression of CNT30573765

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMIHHILIQYSIALLHRRLRISKEKTKNRHKK*

>peptide 2 (65 aa)
MKAMHCTWRLLSNPMIRMWASGYAVLASCTSLITWAESVMSVLAFRVPGKVDKDLSPVKGATMLA*

>peptide 3 (31 aa)
PPTTQSLYHLISYIDRNDQHLQKYILSKHEQ*

Sequence

>CNT30573765
ACCTCCCACCACACAATCCTTGTACCACCTTATCTCATATATAGATAGGAATGATCAACACTTACAGAAGTATATATTAAGCAAGCATGAACAGTAAGTA
AATATAAAGCTGAAAGCAAAGAGCATAGGTATTATTAAAAGTGGTGGCGTTTACATGGCCACCAACGATTAAAACATCCGACGATGATGATACACCATAT
CCTCATACAATATTCCATTGCATTACTCCATCGGAGACTTCGAATAAGCAAAGAAAAAACAAAAAACAGACACAAAAAATAAAATTCCACAAGGGTCCTA
AACATGAGAGTGAAAAAACATGGACATCAAATATTGCGGAAACAGGATCAGCTGGGCTTGTAGGCAATGAAAGCGATGCATTGCACTTGGCGGTTATTGT
CGAATCCGATGATTCGGATGTGGGCGTCAGGGTACGCGGTCCTGGCTTCTTGCACCTCCTTAATCACCTGGGCTGAGTCAGTGATGTCGGTGTTGGCTTT
TCGGGTGCCAGGGAAAGTCGACAAAGATTTGAGTCCGGTGAAGGGGGCCACCATGTTGGCCTGAGCCGGGGTAGCACGGTTGATTGTAGCCACGGTGGCG
GAGGAGACCATGGAGGAAGCCATTTTCGCCTTTTGGGTTTTGCTAACACCACCACTGCCTTGTGAGTTATGGCTCCTGCTTACCCCAT