Detailed information on CNT30573009


BLAST search results

BLAST vs Swiss-Prot:
sp|P93017|DRMH1_ARATH, E-value = 5e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30663210Vitis viniferaTriticum dicoccoides25.3830.4187.8866forward
CNT30683524Vitis viniferaTriticum urartu20.384.9988.6853forward
CNT30707193Vitis viniferaPrunus avium27.6912.2284.7272forward
CNT30150515Vitis viniferaBrachypodium distachyon33.0842.5784.8886forward

Expression of CNT30573009

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LTGKRRYRGCRSGRGHRRRSVLESRRSVGS*

>peptide 2 (56 aa)
LPEKGDTGGVDPAGDTGGDPFWNPGGRSGVKGGVLPKLAEAVIRLGPGDGIVPQLV*

Sequence

>CNT30573009
CTTACCGGAAAAAGGAGATACCGGGGGTGTAGATCCGGCCGGGGACACCGGCGGCGATCCGTTTTGGAATCCCGGAGGTCGGTCGGGAGTTAAAGGTGGA
GTACTTCCGAAGCTTGCCGAGGCCGTGATCCGGCTGGGGCCCGGCGACGGTATCGTCCCACAACTGGTCTAGGAGGCCCATGGCGTAAGTTTGCTGAATC
CGGCGTAATATAGCGAATCCGGCTTACTCTAGAAACCACAGCCACAATGGAGGAGAAGAT