Detailed information on CNT30577042


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554522Oryza barthiiOryza glaberrima31.2337.9399.27410forward
CNT30102652Oryza barthiiOryza rufipogon10.5131.2989.86138forward

Expression of CNT30577042

Peptides detected in this lncRNA

>peptide 1 (59 aa)
VKIPHSLHRVIASDGAAVPLSSRPRARSSRRSPSSLPSEAIHGHRRFFPETAAISPPPA*

>peptide 2 (49 aa)
MMTAILLGLEKRIWTTGGSDQDLTQLHLQLTTQPSACTSLLPILVLANI*

>peptide 3 (37 aa)
MFRCHGGQGCPCASIISTKEAVAFQISLSGKLGRTLH*

>peptide 4 (35 aa)
MEDRDAPVLLLSPPRRLLHSRSPCQASSGGRYIEP*

>peptide 5 (41 aa)
MKLKNEVTVVWLATFPGYKSISLDMEHALYGLLLIGCLDIT*

>peptide 6 (39 aa)
MPLCFYYLHQGGCCIPDLPVRQAREDATLSHDDCNTSRP*

>peptide 7 (49 aa)
MDETRLSCLFICRCYLELSAVVVRLNSNICMSRFVVLECITSDSRLFFL*

>peptide 8 (48 aa)
MFPTNMVKIFSAILCFYRFSCIRYLIDIHESILLLHGFHFQNISAFGI*

>peptide 9 (31 aa)
MHKSVAYFSTSQYIDVPNEHGKNILCNSLLL*

Sequence

>CNT30577042
TAGTTAAAATCCCCCATTCTCTCCACCGCGTCATTGCCTCCGACGGCGCCGCCGTTCCCCTTTCGTCTCGACCTCGGGCACGCAGCTCGCGTCGCTCGCC
GTCGTCGCTTCCCAGCGAGGCCATCCACGGCCACCGTCGCTTCTTCCCGGAGACCGCCGCCATCTCCCCACCCCCCGCGTGACACCACTTCTTGCCCTCT
CCATCTAGGGTTTTCTCGGGCTTCGAATCGCTAAAGCATGTTCCGCTGCCATGGAGGACAGGGATGCCCCTGTGCTTCTATTATCTCCACCAAGGAGGCT
GTTGCATTCCAGATCTCCCTGTCAGGCAAGCTCGGGAGGACGCTACATTGAGCCATGATGACTGCAATACTTCTAGGCCTTGAGAAGAGGATTTGGACCA
CTGGTGGTTCTGACCAAGATTTAACGCAGTTACACCTTCAGTTGACCACTCAACCAAGTGCATGCACAAGTCTGTTGCCTATTTTAGTACTAGCCAATAT
ATAGATGTTCCCAACGAACATGGTAAAAATATTCTCTGCAATTCTTTGCTTCTATAGATTCTCATGCATACGATATCTGATCGATATCCATGAATCCATC
CTTCTTTTGCATGGTTTTCATTTTCAGAACATTTCAGCTTTCGGTATATGAAGCTCAAGAATGAAGTGACCGTTGTCTGGCTTGCAACCTTTCCAGGGTA
CAAATCAATCAGTTTGGATATGGAACACGCATTGTACGGGTTGCTGCTTATAGGTTGTTTGGATATCACTTAATGGATGAAACAAGGTTGTCATGTTTGT
TTATATGCAGGTGCTATTTGGAATTAAGTGCAGTGGTTGTACGGCTTAATTCAAACATATGTATGTCTAGATTCGTAGTACTAGAATGTATCACATCCGA
TAGTAGATTATTTTTTTTATAGGACAGAGGGAGTAGAGTTCAGAGAAAGTGGCTAGCAAGTAGGCCCCACATTTTTTATATTTTTTCCCAGGCACTTAAA
TGTGGGCTTTACCTGTATTTGTGACTGGGTTGCTCCATCATCACAAAGTTGACCAAGTCAAAGGGTCACGTTAACAAAACCGTCCTGTAAAACTATCGAG
AGAATCAAAATTTATCGGTTTTAGTAATTAAAGGGTTGAGATATCTGGCATGGTATTGTGGTTAAAGGGATATGATTTAGATTCGACGACGAGTTAAGGC
AGTCAAAGCGGACTTAATCCGATTTTTGTTAGCAAATTTTAGCCATCTAGTTGTCATGTATTAACATTAGGAAACCGAGGACGGAGAGAGAGGAGTGAAC
GGGGGCACGGTTA