Detailed information on CNT30554338


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3067716Oryza glaberrimaLeersia perrieri28.534.784.8599forward
CNT30596829Oryza glaberrimaOryza meridionalis27.679.7610096reverse complement
CNT30104567Oryza glaberrimaOryza rufipogon24.2133.7310084reverse complement
CNT30577085Oryza glaberrimaOryza barthii10075.9399.71347forward

Expression of CNT30554338

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLRNGNEGMSTIPGFSQIQFEGSKIEKGSYSSIST*

>peptide 2 (32 aa)
HESEKSSSYQNRILKSVQCPTSNGLSFDKQET*

Sequence

>CNT30554338
CACGAAAGTGAAAAATCTTCGTCCTACCAAAACCGGATCTTGAAAAGTGTTCAGTGCCCAACAAGCAACGGGTTGAGCTTCGATAAACAGGAAACTTAAG
ATTAAGATGCTCCGGAATGGAAATGAGGGAATGTCCACAATACCCGGATTTAGTCAGATCCAATTCGAGGGATCTAAAATAGAAAAAGGTAGTTACTCGT
CTATCTCAACGTAAATGAACGAAGTCACTTAATGCTTCCTACTACTACTGCTCCTTCTTACTTATTTTCGTTTTTTCAGGATCTAAAGAAGAAGAGGTTT
TCTTAGCGGGCGTAAATCCGGTAGCTTCTACTTCTGTTCTGTTGTCT