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Detailed information on CNT30596829


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENI4|RPOB_ORYNI, E-value = 2e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222533Oryza meridionalisHordeum vulgare21.4439.8193.36211reverse complement
CNT30554338Oryza meridionalisOryza glaberrima9.7627.6710096reverse complement
CNT30104567Oryza meridionalisOryza rufipogon17.4869.08100172forward
CNT30577085Oryza meridionalisOryza barthii9.7621.0110096reverse complement

Expression of CNT30596829

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGLRFDKSIEQEIEDFFASKNLDTVAQSPYIGLIRAVELLEKEGDGP

>peptide 2 (29 aa)
MESIFCLLNHMKFSGTPHTYFIYVFHTYE*

Sequence

>CNT30596829
AATTCNAGGACTTAGCAATATTTGATTGATCACAATTCGGTATATTCCATTTATTATAAAGGTTCCTAAGGAATTCATTATAGGAATGTTTCCAATAGAA
ATGGTTTGCTTTTGCACATCGAAACCAAAAATTAATCGCGCGGATACGTATAATTCGGAAGAATAGGTGAGTGATTCATACACAGCATCCCTTTCTTTTA
TCGAAGGTTCTAGCAATTGATATCCTTTCGCAAATAATTGAAATGAAATTTCGTGATCTGGATCTTTAATTGTTGGAAACTTCTCAAGTTCTTCTGCCAA
GCCTTGATTAATGAACCTACAAAATCCCTCGAATTGGATCTGACTAAATCCGGGTATTGTGGACATTCCCTNCGTGATCTGGATCTTTAATTGTTGGAAA
CTTCTCAAGTTCTTCTGCCAAGCCTTGATTAATGAACCTACAAAATCCCTCGAATTGGATCTGACTAAATCCGGGTATTGTGGACATTCCCTCATTTCCA
TTCCGGAGCATCTTAATCTTAAGTTTCCTGTTTATCGAAGAAAAATTCCATTATCAGCTCACTCTTCATCAATCCCTACAGATCGATCTAGCAATTATGG
AATCTATATTCTGTTTACTAAATCACATGAAATTCTCGGGAACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACG
AAAGTTCGAATTTGCCAGGGGTCCAAATGGAATGAAAATGGGTATATAAAAGACAAACGAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAGGAG
CTTTCATTGAAGTAGAGGGAGCATAAAAATATGTATTTGCTATGGGACTCCGGTTTGATAAAAGTATAGAGCAGGAAATAGAGGATTTTTTCGCAAGTAA
AAATCTGGATACAGTAGCGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTTTAGAGAAAGAGGGAGATGGACCTGC