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Detailed information on CNT30105879


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DVU4|C3H20_ORYSJ, E-value = 3e-149

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692536Oryza longistaminataOryza sativa97.885.6699.16711forward
CNT30575696Oryza longistaminataOryza barthii97.9495.4499.3712forward
CNT30603920Oryza longistaminataOryza punctata82.5310094.83600forward
CNT30550784Oryza longistaminataOryza brachyantha3786.2287.36269forward

Expression of CNT30105879

Peptides detected in this lncRNA

>peptide 1 (37 aa)
VFSGANDIDPGRSTASSLLSVIRMELGHSRSTSWLSR*

Sequence

>CNT30105879
CTGTTTTTTCAGGTGCTAATGATATTGATCCAGGGAGGTCCACAGCAAGCTCTTTACTCTCAGTTATCAGAATGGAACTAGGACACTCACGTTCAACATC
TTGGTTATCAAGATAAGACTCAGAGAGAATCTTAGATTGCGGAGACACCTCTTTACTCTTAGATATCGGAGTTGGGCTAGGTTCTTCACACTTAATATCT
TGGTTATCAGAAGAAGATTCAGGGAGAATCTTAGACTGCAGAGATAGCTCTTTACTCTCAGGTATCGGAGTTGGACTGGAATATTCACATTTAATATCGT
GGTTATCAGGAGAGGATTCAGGGAGAATCTTAGACTGCTGAGATAGCTCTTTACTCTCAGGTATTTGCGGTGGACTAGGGCATTCAGGTTCAATATCTTG
GTTATCAGGAGAAGATTCAGGGAGAGCCTTAGAATGCGGAGATAGCTCTATACTCTCCGGTATCGGAGGTGGACTAGGGTATTCATGTCCATTATCTTGG
TTATCAGGAGAAGATTCAAGGATAGTCCTTGACTGTTGGGATATCTCTTTACTCCCAGATATTGGAGGCGGGCTAGGATATTCACGTTCAGTATCTTGGT
TATCAGGAGAAGATTCAGGGGTAGTCCTTGACTGTGGGGATAACTCTTTACTCTCAGATATTGGAGGTGGACTACGATATTCATGTTCAGCATCTTGGTT
ATCAGGAGAAGATTCAGGGAGAATCTT