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Detailed information on CNT30534130


BLAST search results

BLAST vs Swiss-Prot:
sp|Q67ZB3|FRL3_ARATH, E-value = 1e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547891Eucalyptus grandisIpomoea triloba25.3733.9283.01153forward
CNT3087232Eucalyptus grandisVigna radiata25.8720.6681.41156forward
CNT30605247Eucalyptus grandisGossypium raimondii23.8838.7180.56144forward
CNT30176227Eucalyptus grandisVigna angularis25.8729.1680.77156forward

Expression of CNT30534130

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MMAISNPTSTGSLGLRLRNFSCTFLVGLSLLHLEDQLLKRINRKLLL*

>peptide 2 (55 aa)
MKKGGVVVVGCMLRQPRLADHDCRWVQGKHKVCHIRTAGTHRLHSGRKSCWQQQR*

Sequence

>CNT30534130
CACGAGGACAAAGATGATGGAAATACAGAACTGCTGATAAGTTTCACAAAGTTAAAAGTACAGTACAGTACATAGATTAGAAATTAAAAGATCCGCTTGA
ACATGACAAGATTAACATGGATTTATGCAGTTCCTAGTTACTAGTCACCATACATTGCAGTACAACATTCAAGGGGTTAAAACTAGCAGTTAAAAGAGGT
TGCCTTCTCCTAACTAATGAAGAAAGGGGGCGTGGTAGTGGTAGGTTGTATGCTGCGGCAGCCAAGATTGGCTGACCACGATTGTCGGTGGGTGCAGGGT
AAACATAAGGTCTGTCATATACGTACTGCGGGTACCCATCGGCTACATTCGGGTAGAAAGTCTTGTTGGCAGCAGCAAAGGTAACAACATGATGGCCATT
AGCAACCCCACCAGCACGGGGTCTCTTGGGTTGAGGCTTCGCAACTTCAGCTGCACTTTTCTTGTCGGCCTTAGCCTTCTCCATCTGGAGGACCAGCTTC
TGAAGCGGATCAACAGGAAACTGCTCCTCTAGCTTATGTTCTTCAATGCACTTTATCACAGCCTTAAGGGCAGAGAGCTCCTTCTCATTCACTTCAATCT
ACA