Detailed information on CNT30547418


BLAST search results

BLAST vs Swiss-Prot:
sp|O49954|GCSP_SOLTU, E-value = 1e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631068Ipomoea trilobaVigna unguiculata39.0915.7288.3786forward
CNT30711379Ipomoea trilobaGlycine max205.0790.9144forward
CNT30565584Ipomoea trilobaActinidia chinensis26.368.3794.8358forward
CNT30206758Ipomoea trilobaHelianthus annuus50.9141.7983.04112forward
CNT30570509Ipomoea trilobaVitis vinifera52.7318.1285.34116forward

Expression of CNT30547418

Peptides detected in this lncRNA

>peptide 1 (59 aa)
VALSLRICCSLVCIAIRRADPTTISAPNSPGGLSIVKANKSDAITTFTPWAWAFFMNSP*

>peptide 2 (71 aa)
SFVPTNMLLPSLHCHTQSRPNHNISTQFTRRLKHCQSQQIRCHHNLHPMGMGILYELPIVQNLALGPGVLNQ

Sequence

>CNT30547418
GTAGCTTTGTCCCTACGAATATGCTGCTCCCTAGTCTGCATTGCCATACGCAGAGCAGACCCAACCACAATATCAGCACCCAATTCACCCGGAGGCTTAA
GCATTGTCAAAGCCAACAAATCAGATGCCATCACAACCTTCACCCCATGGGCATGGGCATTCTTTATGAACTCCCCATAGTCCAAAACCTCGCCCTCGGT
CCCGGGGTACTGAACCAACA