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Detailed information on CNT30375143


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 4e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30540963Arabidopsis thalianaBrassica napus48.2456.2188.95371forward

Expression of CNT30375143

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MIDKTQQAQELGELCSRLPLLFQVLQEEVVVEVVLLKAS*

>peptide 2 (44 aa)
TAKRNVDRFSISPIILFLAAEELPVPEEIKEGAPSFFDSRFIND*

>peptide 3 (66 aa)
MCFSLSTANLCLSLYAGYFSSKTLSTDLDITWNDAATEFKPSPGEEACCCVLILGRFGVSGVPGDS*

>peptide 4 (85 aa)
MLNVLLSFNCQLMPVFVRRILLIQNIVNRFRHHVERCCNGIQTLTRRRSLLLCSDSWKIRCFRGTRRFLIHLTKCCYGYGFTSVSN

Sequence

>CNT30375143
TTACTGCTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGAAGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGC
ACCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTCCCGCCTCCCGCTCCTCTTCCAAGT
GCTCCAGGAGGAGGTGGTGGTGGAGGTGGTCTTGCTGAAGGCAAGTTAGTACTTTTACCACCTCCAGCTGATCTTGGAGGCGGGCGAGGTACTCTAGGAG
GTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGCAGCGTTTTCGCTGGCTTTACCTTCGTTAGATTCATTTGACTCGTTAGACTGATCACC
TGTGGCTGTGATCACAGAGGGAACAACAACCCTTTTCTCCTTTAGTTGAGCAAGTTTAGGAGGCAAAGCCACATTACCGCCAAATCTCTCTGCTCTTGCT
TGATCTGCTTTATGCTTAATGTGCTTCTCTCTTTCAACTGCCAACTTATGCCTGTCTTTGTACGCAGGATACTTCTCATCCAAAACATTGTCAACCGATT
TAGACATCACGTGGAACGATGCTGCAACGGAATTCAAACCCTCACCCGGAGAAGAAGCTTGTTGTTGTGTTCTGATTCTTGGAAGATTCGGTGTTTCAGG
GGTACCAGGAGATTCTTGATCCACTTGACCAAATGTTGTTATGGCTACGGATTCACCAGCGTTTCTAAT