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Detailed information on CNT30522592


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-122

BLAST vs NONCODE:
NONSTUT002515, E-value = 1e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187906Setaria italicaSecale cereale65.6760.4892.53482forward
CNT30116688Setaria italicaOryza nivara64.8557.1491.6476forward
CNT30603927Setaria italicaOryza punctata67.8562.892.57498forward

Expression of CNT30522592

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

Sequence

>CNT30522592
CCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACGTCCAGGCAGCTGCTAGCTGGTCTGG
TCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGAGCAGAGGGCACATCACTTGCCGGGG
ACGAAGTTGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCCGGGTCGTCGGCGAGGCCCAGCGGGTCGAAGGCGCCGCCGGGGTAG
ACCTTGTCGAGTCCCTCCCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCACGACCTGGCAGGCCCAGATGGCCAGGATGCTCT
GCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCGCCGAACTTGACGCC
GTTCTTGGCAAGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCGCGGTTGCGCGCGAAGGTCTCC
GGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGG
GGCGGTCAGGGCCGTACCTGCACGTACGTAGCTG