Detailed information on CNT30522025


BLAST search results

BLAST vs Swiss-Prot:
sp|P29114|LOX1_HORVU, E-value = 2e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30247753Setaria italicaAvena sativa60.6239.8586.62157forward
CNT30722126Setaria italicaTriticum spelta69.530.1587.78180forward
CNT30361620Setaria italicaSorghum bicolor21.2411.0496.3655forward

Expression of CNT30522025

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSSSAWILGSLMPPSYRLMMSWNESNSPGVVPEALVTGHVDLLHQRQPALRVGVC

>peptide 2 (46 aa)
FDDVRDGELEEVVAAGGEEVLDELEREELAHVLERLDLGQLDAALV*

Sequence

>CNT30522025
CTTTGATGATGTGCGGGATGGGGAGCTTGAGGAGGTAGTCGCCGCCGGCGGGGAGGAGGTCCTTGACGAGCTGGAGCGGGAAGAGCTTGCGCATGTCCTC
GAGCGCCTGGATCTTGGGCAGCTTGATGCCGCCCTCGTATAGGTTGATGATGTCCTGGAACGAGTCGAACTCGCCGGGGGTGGTGCCCGAAGCGCTCGTC
ACGGGGCACGTAGATCTGCTCCACCAGCGACAGCCGGCTCTCCGAGTTGGGGTCTGCGG