Detailed information on CNT30722126


BLAST search results

BLAST vs Swiss-Prot:
sp|P29250|LOX2_ORYSJ, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522025Triticum speltaSetaria italica30.1569.587.78180forward
CNT30224272Triticum speltaHordeum vulgare23.4549.4798.57140forward
CNT30247753Triticum speltaAvena sativa27.6441.8890.3165forward
CNT30454858Triticum speltaSaccharum spontaneum26.6361.6383.02159forward
CNT30594625Triticum speltaEragrostis curvula20.2748.9993.39121forward

Expression of CNT30722126

SRR9114152: 0.28 RPKM

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MGLTPASISLANSSSVIHAFSSALMICGLGSLRRKSPPMGMRSLTSWSGKRLRTSSRAGMLGSLMPPS*

>peptide 2 (35 aa)
DMGMACLRGNTVISMTPPALMSSPRARALMFMVSR*

>peptide 3 (55 aa)
GHGHGVLAREHGHLDDAAGVDEQPPRPRVDVHGVAVVRLPSRLLMSTRNGIRLSC*

Sequence

>CNT30722126
GGACATGGGCATGGCGTGCTTGCGCGGGAACACGGTCATCTCGATGACGCCGCCGGCGTTGATGAGCAGCCCCCGCGCCCGCGCGTTGATGTTCATGGTG
TCGCGGTAGTGCGGCTGCCGTCGAGGTTGTTGATGTCGACCAGGAACGGCATCAGGTTGTCGTGCTGATCCACGATGTAGAGCCTGTTGTCGGCGAGCGC
CTGCTCCACGGTGAGGCGCTTGATCATCATGGGGTTGACGCCGGCGAGCATCTCCCTGGCGAACTCCTCGTCTGTCATCCATGCCTTCTCGTCCGCTTTG
ATGATCTGCGGCTTGGGGAGCTTGAGGAGGAAGTCGCCGCCCATGGGGATGAGGTCCTTGACGAGCTGGAGCGGGAAGCGCTTGCGCACCTCCTCGAGGG
CGGGGATGTTGGGCAGCTTGATGCCGCCCTCGTAGAGCTTGAGGATGTCGGCGAAAGAGTCGAACTCGCCGGGGGAGAGGTCGTTGTAGACGTCGTAGCG
GTAGACGCGGTCGTGGTCCTCGTAGGGCCCCTGCTGGTCGTCGCCCCTCAGGTTCCGGAGCTCGTCGTCGCGGTACGGCTTCAGCGCCGCCGGCATC