CANTATAdb - search

Detailed information on CNT30521778

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30350497	Setaria italica	Eragrostis tef	44.14	24.98	89.86	286	forward
CNT30148462	Setaria italica	Brachypodium distachyon	15.12	24.69	89.8	98	forward
CNT30593433	Setaria italica	Eragrostis curvula	22.38	26.85	83.45	145	forward

Expression of CNT30521778

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRARGCLLTRARSHLRRKLRTRSCISLALSHLGLMQ*

>peptide 2 (44 aa)
MVPPALAPARNTREKSPCSASHGSGPVPPAAWEATHLSASHESS*

>peptide 3 (60 aa)
RQWKHESTRAPGSNTAASRAVKLFHLTCVRVVVCSHGRAVTCVGNSGRAPASPSPCRTSG*

Sequence

>CNT30521778
AGACAATGGAAGCATGAGAGTACACGAGCACCAGGCTCAAACACGGCCGCCTCCCGGGCAGTAAAATTATTCCATCTCACATGCGTGCGCGTGGTTGTCT
GCTCACACGGGCGCGCAGTCACTTGCGTAGGAAACTCAGGACGCGCTCCTGCATCTCCCTCGCCTTGTCGCACCTCGGGTTGATGCAGTAGAAGACGTGG
CCCTCGCCCGTGGACTCGAGCAGCTCCACCTCGCCCGGGTATCCGCTGGCCTTGAGGTTCTCGTAGTACCAGACGCCCCTGACGCGCATCCCGAGCCCGC
CGGCGCCGTGCCCGCCAGCGCGCGCCGCCACGACGTGCGCGATGGTGCCCCCCGCGCTGGCCCCGGCCAGGAACACGCGGGAGAAGTCGCCGTGCTCGGC
GAGCCACGGCTCCGGCCCGGTGCCGCCCGCGGCGTGGGAGGCCACCCACCTGAGCGCCTCCCACGAGTCGTCGTAGGCGGCCGGGAGCGGGTGCTCCGGC
GCGAGGCGGTACTCGGGCGCCACCGCGAGGACGCCGGCCTCCGCGACGAGCGCGTTGAGATAGCTGTGCGTGAACGGGTCGGCCGCGGAGCCGACCACGT
AGGCGCCGCCGTGGTAGTAGACGACGACGGGGAGCTTGGCTCGGCGCC