Detailed information on CNT30350497


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5NUF4|HIDM_GLYEC, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521778Eragrostis tefSetaria italica26.9947.6990.29309forward
CNT3015919Eragrostis tefZea mays23.6786.0382.29271forward

Expression of CNT30350497

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGGADQTVGVVAAVAQRAAANGEAVTFDG*

>peptide 2 (50 aa)
MGSPRLCSPARTAMLCAMVPPALAPARNTREKSPCSASHGSGDPPLLPGA*

>peptide 3 (32 aa)
LRERVGQRVVEPGGARVQEPPERVGPRLGHLP*

>peptide 4 (44 aa)
PRTGWTAGRRARGSPGTGTARTRRPAPWPPSLTPFPRRRCPPRR*

>peptide 5 (46 aa)
SENGLDSGSSSPGEPGYRNRQNASARALATFPDAVPSSAMSAAPLK*

>peptide 6 (58 aa)
MNRSTRPLLNCRMMGKNSKLTSVSGSVAAAMGTIDRRTRLPSARSWRRRRLVDRLGAM*

Sequence

>CNT30350497
CTCCGAGAACGGGTTGGACAGCGGGTCGTCGAGCCCGGGGGAGCCCGGGTACAGGAACCGCCAGAACGCGTCGGCCCGCGCCTTGGCCACCTTCCCTGAC
GCCGTTCCCTCGTCGGCGATGTCCGCCGCGCCGCTGAAGTAGGGGTGCACCACAAGGAGCCCCCTGATGGGAAGTCCGAGACTCTGCTCGCCGGCGCGCA
CGGCCATGTTGTGCGCGATGGTTCCCCCCGCGCTGGCCCCGGCCAGGAACACGCGGGAGAAGTCGCCGTGCTCGGCCAGCCACGGCTCCGGCGACCCGCC
ACTGCTGCCGGGGGCGTGAGAGGCCACCCACTTGAGCCCCTGCCACGAGTCCTCGTACGCGGCGGGGAGCGGGTGCTCCGGCGCGAGGCGGTACTCGAGG
GCCACCGCGAGGACGCCGGCCTCCGCGACGAGGGCGTTGAGGTAGTGGTGCGTGAACGGGTCGGCTGCGGAGCCGATCACGTACGCGCCGCCGTGGTAGT
AGACCACGACGGGGAGCTTCTTGTTGCCTTGGCTGCCGGGCGGGAGGAAGAGGCGCGCCCAGAGGCCCGTGGCCGGGTCGACGACAGCGTCCTTGGAGAC
GACGCCCGTGGCGGGGTCGGTGCCGACCGGGACCGGGTCCGGGTTCATGAACCGCTCCACGCGGCCGCTCTTGAACTGCCGGATGATGGGGAAGAACTCG
AAGCTCACCTCCGTGTCAGGGTCCGTCGCCGCCGCCATGGGGACGATCGATCGACGCACGCGCCTGCCTTCCGCACGTTCCTGGCGTCGCCGTCGCTTGG
TGGATCGCCTTGGCGCTATGTAGTGGAGAGGTGGGAGAGGGGATCGGGAGATGGGTGGAGCGGACCAAACGGTTGGTGTAGTGGCGGCGGTGGCGCAGCG
AGCGGCAGCGAATGGCGAGGCCGTAACGTTCGATGGGTAGGCGCGGACTGTGCTGGGTGGTGGAGTGCTGAATAGTCAAGTCATGACGGCCAACGAAAGG
GGCCGTCCTGTCGTGTAATGGAGGACTCACTGGAAGGTGGGACCGAGAGCTTCTAGAAGTCAACTAAGTAGGTAAACCTAAGTTTAGGTGAGACCATGGC
GTCGCAGTCGCCATCGCCATGCCGCCGGCAAGGCTGCAAAATGGC