« Back to Eragrostis curvula search


Detailed information on CNT30593433


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5NUF3|HIDH_SOYBN, E-value = 2e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521778Eragrostis curvulaSetaria italica28.3323.6184.31153forward
CNT30351903Eragrostis curvulaEragrostis tef43.8933.1989.03237forward
CNT30148462Eragrostis curvulaBrachypodium distachyon24.4433.2590.91132forward

Expression of CNT30593433

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TDTPTSMTETHGTVTFLIYTTTYQSNQNSEHK*

>peptide 2 (80 aa)
HRYANQHDRNARHGNISDLHNNLSIKSELGTQVKTTHHKNSTPGFILSRQSKAQHLAHSPRRKPRTRACSARACSHPGLL*

Sequence

>CNT30593433
CACAGATACGCCAACCAGCATGACAGAAACGCACGGCACGGTAACATTTCTGATTTACACAACAACTTATCAATCAAATCAGAACTCGGAACACAAGTGA
AAACAACACATCACAAGAACAGCACACCTGGCTTTATTCTGTCGCGCCAAAGCAAAGCACAGCACCTGGCTCACTCGCCGCGGAGGAAACCCAGGACGCG
CGCGTGCAGCGCCCGCGCTTGCTCGCACCCCGGGTTGCTGTAGTGGAAGACGTGTCCCACGCCCAAGGACTCGAACAGCTCCACCTCGCCGCGGTAGCCA
CTGGCCTTCAGTTTCTCGTAGTACCAGACGCCCCTGTCCCGGAGCCCGTCCTTCTCGGCGACGCAGACGAGCACGCGCTCGGCTGCGACGCGGGCCGCGC
TCCCGCCCGCGGCCTCCGAGAACGGGTTGCACAACGGGTCGTCGAGCCCGGGCGTGCCAGGGCACACGAACCGCCAGAACGCTTCGGACTTGGCCCTCCA
GCTCGCTGACGCGTCGCCGCCGACGGCCGCTTCGCCGTTG