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Detailed information on CNT30520962


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30233904Setaria italicaBrassica oleracea67.5393.8986.3861forward
CNT30310177Setaria italicaCamelina sativa68.247586.44870forward
CNT3059230Setaria italicaArabidopsis lyrata68.2472.3886.55870forward

Expression of CNT30520962

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30520962
CCAGGCACTTGCATTGAACAATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAGA
CCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAG
CAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGAAATAACAAAACAGTACTAGTACAATTGACCAAGGCGCACTTTGCCTGCAAAGAGT
TCAAACGATAACAGAAATGGCCATGGACAAAAAATAAGACATGATATAGAGCATCTAAGTCTCCCAAAAGTAGACACATAATCAACCACCAGACACATCA
TTTCTTCTTGGCTGCAGCCTTGGTCACCTTGGCGCCTGTTGGGTCCTTCTTCTCCACACTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGG
ACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGA
ACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCAC
TGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAG
GCCACGAACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCT
CAACTGACTTCACCTCAGTAGTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCC
AATACCACCAATCTTGTACACATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTT
GGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCGGAGATGGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCA
CCTTCTTCAGGTAGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGTACTTGGGAGTGGTGGCGT