Detailed information on CNT30554380


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Oryza glaberrimaSetaria viridis17.9233.6293.43198forward
CNT30520609Oryza glaberrimaSetaria italica19.8220.0493.61219forward
CNT30640553Oryza glaberrimaNymphaea colorata19.2826.4687.32213forward
CNT30290078Oryza glaberrimaTriticum aestivum14.2120.5591.08157forward
CNT30221329Oryza glaberrimaHordeum vulgare9.0522.3791100forward
CNT30387274Oryza glaberrimaTriticum turgidum11.2227.6896.77124forward
CNT30236263Oryza glaberrimaBrassica oleracea14.1232.182.69156forward
CNT30244040Oryza glaberrimaAvena sativa15.0221.4791.57166forward
CNT30262014Oryza glaberrimaBrassica rapa11.5827.8981.25128forward
CNT30132672Oryza glaberrimaLolium perenne17.9235.4889.39198forward
CNT3042238Oryza glaberrimaChlamydomonas reinhardtii6.4322.4788.7371forward
CNT30340460Oryza glaberrimaEragrostis tef19.9125.8893.18220forward
CNT30105722Oryza glaberrimaOryza longistaminata13.6753.3694.04151forward
CNT30328621Oryza glaberrimaAsparagus officinalis12.7647.3286.52141forward
CNT30581381Oryza glaberrimaEchinochloa crusgalli16.4765.4796.15182forward
CNT30496270Oryza glaberrimaDigitaria exilis19.8222.1990.41219forward

Expression of CNT30554380

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVVWSGSLRRACLISASCSRSFFSGSDANPSGSK*

>peptide 2 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 3 (67 aa)
NFVNINTCQVKSMQCACVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 4 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 5 (55 aa)
MLVVMYGGVSCTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPNTSV*

Sequence

>CNT30554380
ATAACTTTGTTAATATCAATACATGTCAGGTAAAGTCTATGCAGTGTGCATGTGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGA
TCGATGTACAAGTGGATGCATTAATTCATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTA
ATTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCA
ACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGCGGG
CGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACGACGACCCATC
CACCAGCTCCACCTGAAAAACACCATCGGACCATTCCTACGTCAGTGTCATCGTCCTCGTCCGCGGCGCCGGCGACACGTAGTAACCAGGTTTTAAATCT
TCAGCTATAGCTATTTGAAAAAAGGTGTAGCAATTTGTTCTCATGTACAATTTAGTCATAGCTGCCGCTATTTTGAGAGGCTAAACGCTAAATGTTTTAG
CCCGCTAGCTATTTGAAACAGTGGTAGTGAGAAACGCAAACGCCCAGAGATTTTTCGGCTATCCCCACGGGCTAGACGACCTGAGTTTGAAGCCTTACTC
TTTCTAATTATTTGATATATTAGGTCATTTTTTAATATTTGCTTTTTAAAAAAAATGCTGGTAGTAATGTATGGGGGAGTATCGTGTACCTTGCCGGCGT
CTTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCTG
GAGGCCGAACACCTCGGTGTAGGGCTGGAACGGGGTGGACTTCACCTCGCCGGTCTCGAACCGGGTGCCGATGATCTCGCCGGCGTTGTTCTTGGCCAGG
TTCTG