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Detailed information on CNT30508605


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042803Solanum lycopersicumPrunus dulcis47.847.9684.68111forward
CNT3095396Solanum lycopersicumSolanum tuberosum80.1710.6284.41186forward
CNT30569104Solanum lycopersicumActinidia chinensis22.4120.5588.4652forward
CNT30572846Solanum lycopersicumVitis vinifera93.5323.1379.26217forward
CNT3025614Solanum lycopersicumPopulus trichocarpa74.5746.5179.77173forward

Expression of CNT30508605

Peptides detected in this lncRNA

>peptide 1 (50 aa)
PVANELMNAHVIHCYIGFGKLPDRTFNTLVSWCIYFTNSTKLISVWMWQA*

Sequence

>CNT30508605
ACCAGTGGCTAATGAGCTGATGAATGCCCATGTCATTCACTGCTACATAGGCTTTGGCAAACTGCCAGATAGAACCTTCAACACCTTGGTCAGCTGGTGT
ATATACTTTACTAACAGTACCAAATTGATCTCCGTCTGGATGTGGCAAGCTTAGTTCAATTGCTAGTGGCTTCAAAGTTCTATCATCTTGTAGGAAGAGC
AGAGTTCTTGAGGCATAGGCTTTTGTGTTTGC