Detailed information on CNT30501576


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317080Coffea canephoraCorylus avellana20.5212.693.6247forward
CNT3020337Coffea canephoraCitrullus lanatus20.525.8591.4947forward
CNT30508755Coffea canephoraSolanum lycopersicum30.5726.3287.1470forward

Expression of CNT30501576

Peptides detected in this lncRNA

>peptide 1 (40 aa)
TCMHWTLPPLVAREVMSTDFLEMGKEDAALRPVKGATMLA*

>peptide 2 (56 aa)
LHALDPSTVGGKGSNVDGLLGNGERRCSFEAGEGCNHASLSRAGPGGGGNSCRGDH*

Sequence

>CNT30501576
ACCTGCATGCATTGGACCCTTCCACCGTTGGTGGCAAGGGAAGTAATGTCGACGGACTTCTTGGAAATGGGGAAAGAAGATGCAGCTTTGAGGCCGGTGA
AGGGTGCAACCATGCTAGCTTGAGCAGGGCTGGCCCTGGTGGTGGTGGCAACAGCTGCCGAGGAGATCATTGAGGATGCCATTCTCGCTAGCTCGTTCCC
TTCCTTTTTCTTCTGATATAATAGCAAGG