Detailed information on CNT30496070


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 2e-47

BLAST vs NONCODE:
NONSTUT000620, E-value = 4e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189410Digitaria exilisSecale cereale49.8951.5892.58229forward
CNT30304367Digitaria exilisTriticum aestivum45.141.5794.2207forward
CNT30667964Digitaria exilisTriticum dicoccoides49.8942.4192.14229forward

Expression of CNT30496070

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVSVLTKI

>peptide 2 (33 aa)
MKHSFDTAHKTIVQRQRPFMARDRTTKLQQQLQ*

>peptide 3 (79 aa)
MTDGLLTTTETEHQVEGALLLDVVVSKRTPILELLASEDEPLLVRRDALLVLDLGLDIVDGVRRLHLKGDSLAGECLDKD

Sequence

>CNT30496070
AAAAAACATACGAAATATAAACACAGCACAAATTTGAGTTCAGACATCATTTATTCATGATAAGCCGCTGAACCACAGGTCCAAAGCAATTGTTTCAGAT
AAACCCACAGCAACCAGTTCATGAAACACAGTTTCGACACAGCACACAAAACGATAGTTCAAAGACAAAGACCCTTCATGGCCAGAGACCGGACGACCAA
GCTACAGCAGCAGCTTCAATGACTGATGGCTTACTGACCACCACGGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCAGCAAGC
GTACGCCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGG
TGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGTGTCTTGACAAAGATC