Detailed information on CNT30189410


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 4e-49

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30143316Secale cerealeLolium perenne53.1554.1393.22236forward
CNT30364386Secale cerealeSorghum bicolor53.1544.7892.37236forward
CNT30496070Secale cerealeDigitaria exilis51.5849.8992.58229forward

Expression of CNT30189410

Peptides detected in this lncRNA

>peptide 1 (34 aa)
NQQILILSSLIHYLKILLCQQRFQPTDNTGFIVH*

>peptide 2 (35 aa)
MPSLSWILALTLSMVSDDSTSRVMVLPVSVFTKICI

>peptide 3 (98 aa)
MNGRHHPPDDQDKPAGQMPGQLLTTAETEHQVEGGLLLDVVVSEGTAILQLLASEDQALLVRRNALLVLDLGLDIVDGVRRLHLKGDGLARQCLHKDLH

Sequence

>CNT30189410
TAAACCAACAGATTCTTATCTTAAGTTCACTTATTCATTACTTAAAGATACTGCTGTGCCAGCAACGGTTTCAACCAACAGATAACACGGGATTCATAGT
TCATTAAACCTACACAGTAGGACTGACACGAACGAGACAGTTCAAATGAACGGCAGGCACCACCCACCGGACGACCAAGATAAACCAGCAGGTCAAATGC
CAGGGCAATTACTGACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCCAACTGCT
TGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGACGACTCCACCTCAAG
GGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCT