Detailed information on CNT30456894


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT305862Saccharum spontaneumZea mays20.627.4596.46198forward
CNT30343353Saccharum spontaneumEragrostis tef21.7714.7995.22209forward
CNT30363908Saccharum spontaneumSorghum bicolor25.3197.5997.94243forward
CNT30594884Saccharum spontaneumEragrostis curvula20.113.3296.89193forward

Expression of CNT30456894

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MQQLPNYGPILILSCACLLFFSGCYVAVVYIIEIQSFLYFPCPFLIYILAINP*

>peptide 2 (36 aa)
MHRLCRFLLCISVICGRRWCALLWSRTEHDASFSGCV

>peptide 3 (42 aa)
MAGWKRASFSPLRGGARVELAADSFTHMPSKRPWKRASFADE*

>peptide 4 (61 aa)
YLSRSLLAPIENPFAFFARSSEKLNTARHEGLRQIKHYYSIASAVVHDGCYSSLSFDLICC*

>peptide 5 (92 aa)
MICIYFPTCCLELLICLCLSCLIIILYISLASAAYIYAAAAKLRAYFNFIMCVLTVLLWLLCSSCIYNRDPKLFVLSLPFFDIYTSYKSLIC*

Sequence

>CNT30456894
ATACCTTTCTCGCTCGCTCCTTGCACCCATCGAAAATCCATTTGCCTTCTTCGCAAGATCCAGTGAGAAACTAAACACTGCACGACATGAGGGGCTCAGA
CAGATCAAGCACTACTACTCTATAGCTAGCGCAGTTGTGCATGATGGTTGTTATTCTTCCCTCTCTTTTGATTTAATTTGCTGTTAGTCTGCCTCTGCCG
CCATGGTTGTGATATGGCCGGATGGAAGAGAGCGTCCTTCAGTCCACTCAGGGGCGGTGCTAGGGTCGAATTAGCTGCCGACTCATTCACCCACATGCCA
AGCAAACGGCCATGGAAACGAGCTAGCTTTGCAGATGAGTGAATGAAGCGGGAGGTAAAAGCTTCGATCTCGCACCATCTTTGCTTGGACTGAAGGGTGC
TCCCTCCTCCCGGCCTCCTTTGTTTACTTTACCCATGCGCAGCTTCATCATATCTCAGGGTTTTACTTCATGATCTGTATTTATTTTCCAACCTGCTGTC
TTGAACTCTTGATCTGTCTTTGCTTGAGCTGCTTAATTATTATCTTATATATTTCTTTGGCATCTGCTGCATATATATATGCAGCAGCTGCCAAACTACG
GGCCTATTTTAATTTTATCATGTGCGTGCTTACTGTTCTTCTCTGGCTGTTATGTAGCAGTTGTATATATAATCGAGATCCAAAGCTTTTTGTACTTTCC
TTGCCCTTTTTTGATATATATACTAGCTATAAATCCTTGATCTGCTAGCTGAATCTATATATTGTTCTCTTCCAAAAAGAGATCCCATAGTTTCAATTTA
CTTTACTTGTGTGTAGATCTTACAGGACAGGATCGGATCCATACATCGATGCATCGTCTCTGCAGGTTTCTGCTGTGTATTTCTGTGATCTGTGGAAGAA
GGTGGTGTGCACTGTTGTGGTCTAGGACTGAACACGATGCTAGCTTTTCTGGTTGTGTGG