Detailed information on CNT30343353


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30456894Eragrostis tefSaccharum spontaneum14.7921.7795.22209forward
CNT30363908Eragrostis tefSorghum bicolor14.7983.9495.22209forward
CNT30594884Eragrostis tefEragrostis curvula101.6399.191.571436forward

Expression of CNT30343353

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFSHMFPTTFGLSKYVSLHVGLSVISKGVSIHY*

>peptide 2 (29 aa)
YIVRDVTTWFYLMPCRLPFSFAPVKICVS*

>peptide 3 (37 aa)
MLAFGACLPLGLDPQVSQGYFLMSPTREIAQGSCSSF*

>peptide 4 (34 aa)
MLCSRSRFSSCLREFPVYFPSGASCSSFWLLLVH*

>peptide 5 (46 aa)
MVVRCPEGRERPSVHSGAVWVELAADSFTHMPSKRPWKELALQMSE*

>peptide 6 (52 aa)
MSATWTGSSSVPRLFSDVPDKGDCSRLVFFLLRFVIYAEIAFEICDFTCTKC*

>peptide 7 (55 aa)
MVSFSSCNSRRLSISLFALGLGMQLVIRRVPVRLCLLLEHVCHLDWILKCPKVIF*

>peptide 8 (66 aa)
MLVKCDPLVVTHQHVFSHVPHNLWSVKVCEPPCWPFCDFKRGVHSLLSNEILTKTQEGKFDTLNIYI

>peptide 9 (73 aa)
MRSSISSSSLFHLLFCCCTCIYPCLFAMHGSEMPGGKRASFSPLRGGVGRISCRLIHPHAKQKAMERASFADE*

Sequence

>CNT30343353
CTTATATTGTTCGTGATGTCACAACTTGGTTCTATTTAATGCCTTGCCGTCTACCTTTCTCCTTTGCACCCGTCAAAATCTGCGTCTCTTGACAAGATCC
ACAGAGAAGCTTATATGCCATGAGAAGCTCGATCTCGAGCTCTAGTCTTTTTCATCTCCTCTTCTGTTGTTGTACTTGTATATATCCTTGTTTGTTTGCC
ATGCATGGTAGTGAGATGCCCGGAGGGAAGAGAGCGTCCTTCAGTCCACTCAGGGGCGGTGTGGGTCGAATTAGCTGCCGACTCATTCACCCACATGCCA
AGCAAAAGGCCATGGAAAGAGCTAGCTTTGCAGATGAGTGAATGAAGCGGGAGGTAAAAGCTTCGATCTCGCACCATCGTTGCTTGGACTGAAGGGTGCT
CCCTCCTCCGGAACTTTAGACATGCAGCTTCGATCTTTAAGGTTCTGGGAGTTGATGGTCTGTATGCTCCTTCCTTCAGCTAACATATGCATGTCTTGAT
CTGTGTCTCTTTATTTGCTTTGAGCTGCTTAATTAGGCATGCTGTGTAGCAGAAGTCGGTTCTCTTCTTGCCTCCGCGAATTCCCAGTCTATTTTCCCTC
AGGTGCTTCCTGTTCTTCTTTTTGGTTACTGTTAGTCCACTAGCTGATTGAGATTTAAAGTTTTGTACTTTCCTTAACCTGGCTCTTTGGAATACTAATA
AGTCCTTGATCTGCTCGCTGAACCTTACTTTATCTCCTCCAAAAAGAGAATATACAAGTTTCTGAAAAAGAAAAGAAAGAACTTCTGCTTTACTTGTGTG
GATCTTTCAGTTTTACACGATCTATACATGCATTCTTGGGTTTAACTTTCTGTGATCTATGATCTAATGAAGATGCAGTGGTGTGCGCTGTTGTGGGCTA
GGATGATAAACACGATGCTTTTCTAGGTGCGGGAATCTGGATATGGTGTCTTTCAGTTCGTGCAACAGCAGACGTCTTTCGATCTCCCTGTTTGCTTTGG
GTCTTGGCATGCAACTAGTGATTCGACGTGTGCCTGTGCGGCTATGCTTGCTTTTGGAGCATGTCTGCCACTTGGACTGGATCCTCAAGTGTCCCAAGGT
TATTTTCTGATGTCCCCGACAAGGGAGATTGCTCAAGGCTCGTGTTCTTCCTTTTGAGATTTGTGATATATGCTGAAATTGCCTTTGAGATTTGTGATTT
TACCTGCACAAAATGTTAGTGAAATGTGATCCACTTGTGGTTACTCATCAGCATGTTTTCTCACATGTTCCCCACAACCTTTGGTCTGTCAAAGTATGTG
AGCCTCCATGTTGGCCTTTCTGTGATTTCAAAAGGGGTGTCCATTCATTACTAAGTAACGAAATTTTGACCAAGACACAAGAAGGGAAATTTGATACTTT
GAATATATATATA