Detailed information on CNT30446343


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691960Saccharum spontaneumOryza sativa12.2326.3392.1389reverse complement
CNT30678378Saccharum spontaneumSetaria viridis13.623.5292.9399reverse complement
CNT30226858Saccharum spontaneumHordeum vulgare12.532.3883.5291reverse complement

Expression of CNT30446343

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MAKKVAVVATLLALNLLLFGFADACGCGVPLHRPASQHPGHQPQPAHQPQPPRQLLRQARPLGLPVLLIDLIVANTRPAGLNNHDFSATSTSY*

>peptide 2 (58 aa)
MRLRCASAPPCEPTSWASTSTCPSTSASSSTTAAGASPRASSAPDRSHRRQHPAGRAK*

>peptide 3 (78 aa)
MISQQQAQATSAQHSSSFVALICFVLLLLWVCVSSRICYHACMHATCPSSRRPVFVLDGSMIDRVERPGGTRHDDLHL*

>peptide 4 (47 aa)
MHACNMSIVASSCVCAGWIHDRSCREAWRDPTRRSPSMNINTIITVW*

Sequence

>CNT30446343
CCCTGTGGTGTGCCCTCGGGCGGCTATAAATAGCACCCCCAGCAAGCTGCGATCCGATCACAAGTTGCAGTGCCACAGTTAGTTCCAGGCAGCAGATCAG
CAGAGACACACGCACAGTGCCAAAGCACTAGCGACCTGCACTGTGATCTGCAGGTACGCTAGCAATCTACTCCCTACGTCTACGTGGTAGCTAGCTAGCT
AGCCATGGCGAAGAAAGTGGCCGTGGTGGCCACGCTGCTGGCCCTGAACCTCCTCTTGTTCGGCTTCGCCGACGCATGCGGCTGCGGTGTGCCTCTGCAC
CGCCCTGCGAGCCAACATCCTGGGCATCAACCTCAACCTGCCCATCAACCTCAGCCTCCTCGTCAACTACTGCGGCAGGCGCGTCCCCTCGGGCTTCCAG
TGCTCCTGATCGATCTCATCGTCGCCAACACCCGGCCGGCCGGGCTAAATAATCATGATTTCTCAGCAACAAGCACAAGCTACTAGTGCACAGCACAGTT
CTTCGTTCGTCGCTTTAATTTGTTTTGTTTTGCTTTTGCTTTGGGTGTGTGTTTCTTCACGAATCTGCTATCATGCATGCATGCATGCAACATGTCCATC
GTCGCGTCGTCCTGTGTTTGTGCTGGATGGATCCATGATCGATCGTGTCGAGAGGCCTGGCGGGACCCGACACGACGATCTCCATCTATGAATATAAATA
CCATTATTACAGTGTGGTAATTATCTGT