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Detailed information on CNT30401200


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000282, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193763Triticum turgidumSecale cereale80.0392.0999.261619forward
CNT30140791Triticum turgidumLolium perenne79.4498.0598.821607forward
CNT3010929Triticum turgidumZea mays80.7291.79971633reverse complement
CNT30681368Triticum turgidumTriticum urartu97.9288.2497.431981forward
CNT30719826Triticum turgidumTriticum spelta6560.9197.951315forward
CNT30369028Triticum turgidumSorghum bicolor69.910098.31414forward

Expression of CNT30401200

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPTRDRRMLLIGLRRHLMRNQSLWVPGGVWSQG*

>peptide 2 (30 aa)
MSCAAQERQPARLLPLSFHESGSAERWPCW*

>peptide 3 (56 aa)
MINRDSRGHSYFIVRGEILGFMKDEQLRKHLPRMFSLIKNESWGLEDDQIPSWSQP*

>peptide 4 (38 aa)
MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEPSLRS*

>peptide 5 (36 aa)
MITRRIARPSCPRRIIQISALSTFDGRIGAYHGGDG*

>peptide 6 (29 aa)
MPSKRESSARVDYVPALCTHRPSLLPIEWP

>peptide 7 (51 aa)
SDNCCLAADAHWVCRCGQIALAALPRGAGTLRARCYQGNLAPAFGLGCCSR*

Sequence

>CNT30401200
CTTCGGATAATTGTTGCCTCGCGGCGGACGCCCATTGGGTGTGCCGCTGCGGCCAAATAGCGCTTGCGGCGTTGCCTCGTGGGGCTGGCACATTACGTGC
CCGTTGCTATCAAGGCAACCTCGCTCCCGCTTTTGGTCTCGGATGCTGCTCACGATAAAGGGTCGTGGCCCTTTCGGTTGCCTCGACCCGACCCAAAGCT
CTCCGAACTGAGAACAAACGGAACAGGACTTGCCTCTACCTCTCCACAGTTACGTGGTAGGATACGCAACTCTCTGCGCCGATCCTCAAGGACGATGAGC
TGTGCCGCTCAAGAGCGACAACCGGCCCGGCTGTTGCCTCTGAGTTTCCACGAAAGTGGAAGCGCAGAACGATGGCCGTGCTGGTAGTCACCAAGGACGT
GCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACCAATTTGAACTGTGAAACTGCGAATGGC
TCATTAAATCAGTTATAGTTTGTTTGATGGTACGTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGGAGGG
GCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTGCTCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACGGCCTTCGTGCCCGCGACGCATC
ATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACAGAGAATTAGGGTTCGATTCCGGAGAGGGAGCC
TGAGAAACGGTTACCACATCCAAGGAAGGCAGCAGGAGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCATT
AGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCAGTAATTCCAGCTCCAATA
GCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACGGCGAGCACCGACCTACTCGACCCTTCG
GCCGGCATCGCGCTCCTAGCCTTAATTGGCCGGGTCGTGTTTCCGGCATCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATAC
ATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCAT
AGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAA
GACGATCAGATACCGTCCTGGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAA
GTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGACATAGCAAGGATTGACAGACTGAGAGCT
CTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACT
AGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAG
ATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGA
TAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGT
CGCTCCTACCGATTGAATGGCCC