Detailed information on CNT30719826


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000306, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193763Triticum speltaSecale cereale60.9174.898.021315forward
CNT30401200Triticum speltaTriticum turgidum60.916597.951315forward
CNT30140791Triticum speltaLolium perenne60.9180.2397.411315forward
CNT30681368Triticum speltaTriticum urartu60.3558.0498.471303forward
CNT30369028Triticum speltaSorghum bicolor60.3592.1597.161303forward

Expression of CNT30719826

SRR9114152: 112.49 RPKM

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RRIAQPSCRRRIIQISALSTFDGRIGAYHGGDG*

>peptide 2 (38 aa)
MGGGAWPFLVGGVICLVNSVNERDLSLLTSYAEPSLRS*

>peptide 3 (29 aa)
MKVGGSKMIRYRPSLNHKRCRPGIGGCCL*

>peptide 4 (33 aa)
MPTRDRRMLLIGLRRHLMRNQSLWVPGGVWSQG*

>peptide 5 (52 aa)
MINRDSRGHSYFIVRGEILGFMEDEQLRKHLPRMFSLIKNESWGLEDDQIPS*

>peptide 6 (52 aa)
MINRDSRGHSYFIVRGEILGFMEDEQLRKHLPRMFSLIKNESWGLEDDPIPS*

>peptide 7 (58 aa)
MPTRDQRMLLIGLRRHLMRNQSLWALLADPMIHDNSTDRTAFMPVTHHSNFCPINFRW*

Sequence

>CNT30719826
CTCGACGGATCGCACAGCCTTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGG
GTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACG
GGGAGGTAGTGACAATAAATAACAATACCGGGCGCATTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAA
GTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGG
TCCGCCTCACGGCGAGCACCGACCTACTCGACCCTTCGGCCGGCATCGCGCTCCTAGCCTTAAGTGGCCGGGTCGTGTTTCCGGCATCGTTACTTTGAAG
AAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTA
ATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGGAAGACGAACAACTGCGAAAGCATTTGCCAAGGA
TGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCCGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGATGTT
GCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGCTCTGCTCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACGGCCTTC
ATGCCGGTGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGA
TTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGAAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACCGGGAGGTAGTGACAATAAATAA
CAATACCGGGCGCATTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTAGTGCCAGCAGCCGCGGT
AATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGTCGGCCGGTCCGCCTCACGGCAAGCACCGA
CCTACTCGACCCTTCGGCCGGCATCGCGCACCTAGCCTTAAGTGGCCGGGTCGTGTTTCCGGCATCATTACTTTGAAGAAATTAGAGTGCTCAAAGCAAG
CCATCGCTCTAGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGG
GGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGGAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAATGA
AAGTTGGGGGCTCGAAGATGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACTCCGCCGGCAC
CTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGACATAGCAAGGAT
TGACAGACTGAGAGCTCTTTCTTGATTTTATGGGTGGTGGTGCATGGCCATTCTTAGTTGGTGGAGTTATTTGTCTGGTTAATTCCGTTAATGAACGAGA
CCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGG
TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAAT
TTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAAAGCCTAGTA