Detailed information on CNT30233011


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670887Ananas comosusSetaria viridis1.7620.7893.7548reverse complement
CNT30226764Ananas comosusHordeum vulgare2.1720.2794.9259reverse complement
CNT30398960Ananas comosusTriticum turgidum3.3825.5693.4892forward

Expression of CNT30233011

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MRGFFFFFFGCKCEGEEKVCACVCVRMQPATYRCCNNCTKPPPLTPITTCSLALRNSRSPSVCPFALKFDRQARFNVLSKNIS*

>peptide 2 (42 aa)
MRKKKEKFFSKSEATYWSSYFIPRVDSLSKVLHPNPFPFWIL*

>peptide 3 (39 aa)
MEFVSNKLYVTPRPRNQFGPVRARQTDAERTASPLSAQG*

>peptide 4 (47 aa)
SVTHYRSFPNKINKESFIEFCPLFAELNRSKGLNPSAVFHLSQMDQQ*

>peptide 5 (43 aa)
MSFILFLSIKEPITYLRTIGFTSIDPILINPLYQASNSHYNIS*

>peptide 6 (62 aa)
MCHSFLYSLLTRCHSFFCHCYLHVIHSLFVNQRAYHLSPHYRIHKYRPNPYQPTISSIQFAL*

>peptide 7 (59 aa)
MSRPDHETNSVRFGRVKQTPNGQHLPCPLKAKQPNHVQEFTQESIHTCTITRSTTSANR*

>peptide 8 (30 aa)
MYKNLPRNQFIHARSRGARQVLTDKSKVQV*

>peptide 9 (29 aa)
MPLVLLSLLSTCHSFSFCQSKSLSLISAL*

>peptide 10 (62 aa)
MLILSMKIGCLGVYSVAITGFITFLPFSPLIKKRIVNDRFTIESVNPKRRNIVITAADQTRT*

Sequence

>CNT30233011
CTCGGTCACTCATTACCGTTCGTTCCCTAACAAAATTAACAAAGAAAGCTTCATAGAATTTTGTCCCCTTTTCGCCGAACTAAATAGATCTAAGGGCCTT
AATCCATCAGCAGTTTTTCACCTATCACAAATGGATCAACAATAGGTTTTTTCTTTTTTGCTCCTTCATCTCTCTCCCCTCTCTCGCTCTTCGTCATGCA
TAACGTACCCCGCCCCCCCTCTCCCGTTGGCCGGGATTCCCTGTGAGCCATTATCTCTTACTACAGCCATTCGGGCGGAACCGAAGAGCACATCACATGT
TGATTTTGAGTATGAAGATTGGTTGCCTCGGAGTTTATTCAGTAGCCATCACTGGTTTCATTACTTTTCTTCCATTCAGTCCTCTCATAAAAAAAAGGAT
AGTGAATGATCGATTCACCATTGAGAGCGTTAACCCCAAAAGGAGGAATATTGTGATAACAGCGGCAGATCAAACAAGAACTTGATGAGAAAAAAAAAAG
AGAAATTTTTTTCCAAATCCGAAGCAACCTATTGGTCGAGCTACTTCATTCCTAGGGTTGACTCTCTTTCTAAAGTTTTGCATCCTAATCCATTTCCTTT
TTGGATCTTGTGAAAAATGGAGTTTGTATCGAATAAATTATATGTCACGCCCCGACCACGAAACCAATTCGGTCCGGTTCGGGCGCGTCAAACAGACGCC
GAACGGACAGCATCTCCCCTGTCCGCTCAAGGCTAAGCAACCTAATCATGTACAAGAATTTACCCAGGAATCAATTCATACATGCACGATCACGAGGAGC
ACGACAAGTGCTAACAGATAAGAGCAAGGTACAAGTATAAGACATACAAGTAAATAAAGAGAGAAAGTTCTATCTATTACATTCATTCCACCTCTTTAAT
ACATCGATTTACTTTCAAAACATAAACATAAATATAACATGCTTTTACATCTTCCAAAATAACCTCACACCTATACATCATCTACTCTCAAATACAAGGG
GTGACGGCTAATGCAAAAAGGTAGATAGCTAATGTAACTAGGGCGCTAGGCGCTTACCGCGATCCTCGCCCTGTGAACTCGCGCTCGGCCCTGCAACAAA
GTGGGGTGAGAACTATTGTCCATAGTTCCCAGTGGGTTCGGCCGCCGACTCCGCCGGTCTCCCCACTAGGTCCAAGTGGGCACAAGTAGATAAACAGATA
GATAGATATGGAAAGCTGTGATGACAGAATAGTAAAGCTACACTATTATGCCCGAATCATGTATATGAAAATGCATGCACAATGAAATAGGTAATCAACT
AGCTCGTCATATGTCCAAGAAGTAAAGCTATTTACTTGTTTATTAATCTCGTGGCTCACCCGAGGGTTCGCCTACTACTCGCATAGCCATCTCGACGCGT
AGGGAGACTCAACTCAAACTACGAATCCGAGACCGTCTGCGGGACCCCACATAGGCTATCCCTCGGGACCCCAAATAGGCTATCCCACGTGACCAACTCC
GGAGCGCACTACTTGCGTGGAGCGACCATCACAAGTTCTGAGAAGATAGTGAGCATGATCCAATCCTCTCAACTCAAGGATACCCTATCCTCTAGGGTTG
CTATCATCGTGGAATCAATAGGTTTCACATAGACTAAGATTCACATGTGCCACTCGTTCTTATATTCATTGTTAACTAGATGCCACTCGTTCTTTTGTCA
TTGTTATCTACATGTCATTCATTCTCTTTTTGTCAATCAAAGAGCCTATCACTTATCTCCGCACTATAGGATTCACAAGTATCGACCCAATCCTTATCAA
CCCACTATATCAAGCATCCAATTCGCACTATAATATTAGCTAGGAAAGCATAAGGAATGACGGTACATAATTACCCTACAATGCATATAAGTGCAAGATG
CAAGATCATAACATACTAAGACATAAAGGGGAGTCCAGTTGCTTCGGGATGGTCACCACCCACCTCTTGGTAGTGCCGTGAAGTTAGAAAACTCGACGTC
GCGATCCTTGGTCGCCGCCTCAACTCTTCGGGTCAATACGAACCCTCGAGCGCTTGTTCCGGCGATAACTCCGCACTCGCTCGACGAATCGACGAACCGT
CTTTGCCAACGCGTTTAGAAATCTAGCAATTAGGTTTACAGAGGGTTAATTGAGATCAAACCCCCATATTTCCAAAAATTGCATTTTGAACCCTAGGTTT
CATCTATTGCAAGAATTCACTAAATTGATCCATGATTTAGGCAACAATCATCTATTTAGCATCATAGGATTCTAATATATCCATTTTTAGAGCATATAAA
TGAAGCCCTAAAATTCTACCATTAAAGGGCATCCAAGCTTACCTCTCAAGCAAGCTCCAATGGAGAGGAAGAAGATGAAAGAGATGAAGATTAACTTCCA
AACTTGCTTTTCCACCAAATCCTTCTCTTGATTCCACCCTCAAGAGAGAGAATGAGAGGGTTTTTCTTTTTCTTCTTTGGTTGCAAGTGTGAGGGAGAGG
AGAAGGTGTGTGCGTGTGTGTGTGTACGCATGCAGCCAGCCACCTATAGGTGCTGTAACAATTGCACAAAACCCCCCCCTCTTACACCTATTACAACTTG
CAGTTTAGCACTTCGGAACAGTCGGAGCCCTTCTGTATGTCCGTTTGCGCTCAAATTTGACAGGCAGGCTCGGTTTAACGTACTGAGCAAGAATATATCT
TAAGTTTTCAGTTTCGATCCCG