Detailed information on CNT30393652


BLAST search results

BLAST vs Swiss-Prot:
sp|P29250|LOX2_ORYSJ, E-value = 3e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30250756Triticum turgidumAvena sativa51.2462.9480.83433forward
CNT30666056Triticum turgidumTriticum dicoccoides52.5446.7486.04444forward
CNT30344056Triticum turgidumEragrostis tef46.6342.4182.23394forward

Expression of CNT30393652

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MATTCFSMPSSLAPNRLNASCALASDVHAGVSCCPRYTSSEECLDRISISEMPTSAWNWLVMVRMKAFSGSRSSRAYSSLPGTGIGLRLADGLLGW*

>peptide 2 (52 aa)
PKNRANRGVTGGLPRKKQRRVGYYFWRTEGASQHRLHYWTKKKGIFLYTTMH*

>peptide 3 (54 aa)
PKTEQTEELPEVCQEKNNGGLDTIFGEQREHRNIDFIIGQKRREFFCTRRCINR*

>peptide 4 (56 aa)
QKQSKQRSYRRFAKKKTTEGWILFLANRGSIATSTSLLDKKEGNFSVHDDALTGRQ*

Sequence

>CNT30393652
CCCAAAAACAGAGCAAACAGAGGAGTTACCGGAGGTTTGCCAAGAAAAAAACAACGGAGGGTTGGATACTATTTTTGGCGAACAGAGGGAGCATCGCAAC
ATCGACTTCATTATTGGACAAAAAAGAAGGGAATTTTTCTGTACACGACGATGCATTAACCGGTAGGCAGTAGCCAGCTGAGCTTCCGCATGCCGATCGG
ACCCGTCGTGCACACACGCATTATTGCCTTATTACTGAGATCATGGCAAGCATATAGCTAGTAGCTAGTATCCGGTGCAAGCAAGCAAGCAGAGATAGAG
GTCCTCAGATGGAGATGCTGTTGGGGATGCCCCTGGCCGTGAGCCCCTCGGCCTGGCCGGTGTGGTCGGAGGTGTTGGGGTAGAGCAGCATGTAGGGGAA
CTTGGCCGGCCCGGTGCGGTTCTTGAGCCGCGGGTCGCCGTTCATGGCCACCACCTGCTTCTCGATGCCCTCCAGCCTCGCCCCGAACCGCCTGAACGCC
TCCTGCGCCTTGGCGTCCGACGTCCACGCCGGCGTCTCGTGCTGCCCCAGGTACACCTCGTCCGAGGAGTGCTTGGACAGGATCTCCATCAGCGAGATGC
CCACCAGCGCCTGGAACTGGTTGGTGATGGTGAGGATGAAGGCCTTCTCCGGGTCGCGCTCCAGCAGGGCGTACTCCTCGCTGCCCGGCACCGGCATCGG
CCTCCGGCTCGCCGACGGCTTGTTGGGGTGGTAGCCTGAGTACGGGTACTCTGTCACCCACTGCTCGATCGCGTGCCAGACCTCCAGCCCGTCCGCCGCG
TACGGGTAGTCCTCGATCAGCAGCCGCACCTTGTGCGGGCTCGAT