Detailed information on CNT30250756


BLAST search results

BLAST vs Swiss-Prot:
sp|P29250|LOX2_ORYSJ, E-value = 1e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224984Avena sativaHordeum vulgare16.8643.7787.07116forward
CNT30393652Avena sativaTriticum turgidum62.9451.2480.83433forward
CNT30666056Avena sativaTriticum dicoccoides92.0166.6387.05633forward
CNT30684973Avena sativaTriticum urartu17.5932.2785.12121forward
CNT30594693Avena sativaEragrostis curvula53.9291.3880.05371forward

Expression of CNT30250756

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPSNVAPNRLNASSALASEVHSGVSRCPR*

>peptide 2 (40 aa)
MEMLLGMPLAVSPVASPLWSEVFGYSSMYGNFAGPLRFLS*

>peptide 3 (32 aa)
PIPYISLDGDAVGDAPGREPSGITLMVRGVWV*

>peptide 4 (45 aa)
MPTRAWNWLVMVRMNTFSGSRPSKAYSSVFGSGIGRRLADGLLGW*

>peptide 5 (43 aa)
MMVVHALTSSATFSILGHHFASLRSPCPTSRTSFHHACSSTSP*

>peptide 6 (43 aa)
MPPVPWHLRSIPVYHVARGKPRQRSAWTRSPAKICRRGPGTGW*

Sequence

>CNT30250756
CGCCTATTCCGTACATCTCATTAGATGGAGATGCTGTTGGGGATGCCCCTGGCCGTGAGCCCAGTGGCATCACCCTTATGGTCAGAGGTGTTTGGGTATA
GTAGCATGTACGGAAACTTCGCCGGCCCATTGCGGTTCTTGAGTTGAGGGGTTTCCATTCAAGGCCACCACTTGGCTCTCGATGCCTTCCAATGTTGCCC
CGAACCGCTTGAATGCCTCCAGTGCCTTGGCATCTGAGGTCCATTCCGGTGTATCACGTTGCCCGAGGTAAACCTCGTCAGAGGAGTGCTTGGACAAGAT
CTCCAGCAAAGATATGCCGACGAGGGCCTGGAACTGGTTGGTGATGGTGCGGATGAACACCTTTTCTGGGTCGCGGCCTAGCAAGGCATACTCCTCGGTG
TTTGGCTCTGGCATCGGACGACGGCTTGCTGATGGCTTGTTAGGGTGGTAACCTGCATATGGGTACTGCCCAAAGTTCACAGCCGCATGTAGCGCAGATC
CTGTCCAGATGATGGTGGTGCATGCCTTGACCAGCTCCGCCACATTCTCCATCTTGGGCCACCACTTCGCGTCCTTGAGGTCGCCATGCCCGACCTCGCG
AACCTCTTTCCACCATGCCTGTAGCTCCACGTCACCCTGAAGCACACCATCATTGGGGTAGTAGATTGCTACATACTCTTGCACCCAC