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Detailed information on CNT30393452


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 8e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187466Triticum turgidumSecale cereale69.7970.7597566forward
CNT30664734Triticum turgidumTriticum dicoccoides89.7769.07100728forward
CNT30142775Triticum turgidumLolium perenne69.0548.6590.36560forward
CNT30684440Triticum turgidumTriticum urartu92.7385.1699.6752forward
CNT30579499Triticum turgidumEchinochloa crusgalli32.0639.193.08260forward

Expression of CNT30393452

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 2 (79 aa)
MMSRPSPRGPPPTRPPSEKIWAPALNHTASPNLMPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 3 (43 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

Sequence

>CNT30393452
CTTGAAGTACCATATACGCCATGCAGTTGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTAC
ATTGCGCGCAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGT
ACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTG
TTGACCGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGC
GGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCGAGGCCAAGTGGGTCGAAGGCGCCGCCCGGGTAGATGATGTCGAG
GCCCTCGCCGAGGGGCCCGCCACCAACACGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTG
GACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAG
CAGACAATCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTC
AGGGCCGTACC